Motif IL_28060.1 Version IL_28060.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-6 | 4-8 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V8P_277 | 4V8P | 0.0000 | 1 | Major groove minor groove platform with tHH (H) | D1 | LSU rRNA | U | 3036 | A | 3037 | A | 3038 | U | 3039 | U | 3040 | * | A | 3080 | C | 3082 | A | 3083 | cWW | cWW | ||
| 2 | IL_4WF9_050 | 4WF9 | 0.7246 | 0 | Major groove minor groove platform with tHH | X | LSU rRNA | G | 1356 | G | 1357 | A | 1358 | A | 1359 | G | 1360 | * | C | 1368 | G | 1369 | C | 1370 | cWW | tHH | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAUU*ACCA | 1 |
| GGAAG*CGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAU*CC | 1 |
| GAA*G | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove minor groove platform with tHH (H) (1)
- Major groove minor groove platform with tHH (1)
- Basepair signature
- cWW-tHH-L-cWS-R-cWW
- Heat map statistics
- Min 0.72 | Avg 0.36 | Max 0.72
Coloring options: