Motif IL_30979.1 Version IL_30979.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-6 | 1-8 | 2-5 | 2-6 | 2-7 | 3-4 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2Y9B_006 | 2Y9B | 0.0000 | 1 | X | HOMO SAPIENS U4A SNRNA | U | 846 | A | 847 | G | 849 | * | C | 856 | U | 857 | A | 858 | A | 859 | G | 860 | cWW | tHW | cWW | cSH | ||||
| 2 | IL_3UXR_109 | 3UXR | 0.2633 | 0 | B | 5S ribosomal RNA | C | 30 | C | 31 | C | 32 | * | G | 50 | G | 51 | A | 52 | A | 53 | G | 54 | ncBW | cWW | ncWW | ncWWa | ntSW | cWW | ncSs | |
| 3 | IL_3Q1Q_009 | 3Q1Q | 0.9290 | 1 | Receptor of 11-nt loop-receptor motif | C | TRNA (PHE) | U | 32 | A | 33 | G | 35 | * | C | 44 | U | 45 | A | 46 | A | 47 | G | 48 | cWW | tHW | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAUG*CUAAG | 2 |
| CCC*GGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*UAA | 2 |
| C*GAA | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_30979.1 | Only in the parent motif |
|---|---|---|---|
| IL_99663.1 Compare | IL_3Q1Q_009 | IL_2Y9B_006, IL_3UXR_109 |
Children motifs
| Child motif | Common motif instances | Only in IL_30979.1 | Only in the child motif |
|---|---|---|---|
| IL_13682.1 Compare | IL_3Q1Q_009 | IL_2Y9B_006, IL_3UXR_109 |
- Annotations
-
- (2)
- Receptor of 11-nt loop-receptor motif (1)
- Basepair signature
- 08_cWW-tHW-cWW---cSH
- Heat map statistics
- Min 0.26 | Avg 0.46 | Max 0.93
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