Motif IL_31066.2 Version IL_31066.2 of this group appears in releases 0.6 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_054 | 1FJG | 0.6275 | 2 | A | SSU rRNA | C | 1399 | G | 1401 | * | C | 1501 | A | 1502 | G | 1504 | cWW | cWW |
| 2 | IL_2XZM_083 | 2XZM | 0.1931 | 2 | A | 18S RRNA | C | 1608 | G | 1610 | * | C | 1717 | A | 1718 | G | 1720 | cWW | cWW |
| 3 | IL_3U5F_080 | 3U5F | 0.0000 | 2 | 6 | 18S rRNA | C | 1636 | G | 1638 | * | C | 1764 | A | 1765 | G | 1767 | cWW | cWW |
| 4 | IL_2AW7_060 | 2AW7 | 0.0882 | 2 | A | 16S ribosomal RNA | C | 1399 | G | 1401 | * | C | 1501 | A | 1502 | G | 1504 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCG*CAAG | 4 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| C*AA | 4 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_31066.2 | Only in the parent motif |
|---|---|---|---|
| IL_31066.1 Compare | IL_1FJG_054, IL_2XZM_083, IL_2AW7_060 | IL_3U5F_080 | IL_3O30_082 |
Children motifs
| Child motif | Common motif instances | Only in IL_31066.2 | Only in the child motif |
|---|---|---|---|
| IL_31066.3 Compare | IL_2AW7_060, IL_3U5F_080, IL_1FJG_054 | IL_2XZM_083 | IL_4BPP_080 |
- Annotations
-
- (4)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.09 | Avg 0.29 | Max 0.63
Coloring options: