Motif IL_31066.4 Version IL_31066.4 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUX_081 | 4CUX | 0.1985 | 2 | 2 | 18S RRNA | C | 1636 | G | 1638 | * | C | 1764 | A | 1765 | G | 1767 | ncWW | cWW |
| 2 | IL_2AW7_060 | 2AW7 | 0.0000 | 2 | A | 16S ribosomal RNA | C | 1399 | G | 1401 | * | C | 1501 | A | 1502 | G | 1504 | cWW | cWW |
| 3 | IL_3U5F_080 | 3U5F | 0.0882 | 2 | 6 | 18S rRNA | C | 1636 | G | 1638 | * | C | 1764 | A | 1765 | G | 1767 | cWW | cWW |
| 4 | IL_4BPP_080 | 4BPP | 0.1405 | 2 | A | 18S RRNA | C | 1608 | G | 1610 | * | C | 1717 | A | 1718 | G | 1720 | cWW | cWW |
| 5 | IL_1FJG_054 | 1FJG | 0.6224 | 2 | A | SSU rRNA | C | 1399 | G | 1401 | * | C | 1501 | A | 1502 | G | 1504 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCG*CAAG | 5 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| C*AA | 5 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_31066.4 | Only in the parent motif |
|---|---|---|---|
| IL_31066.3 Compare | IL_4BPP_080, IL_2AW7_060, IL_3U5F_080, IL_1FJG_054 | IL_4CUX_081 |
Children motifs
| Child motif | Common motif instances | Only in IL_31066.4 | Only in the child motif |
|---|---|---|---|
| IL_31066.5 Compare | IL_4BPP_080, IL_2AW7_060, IL_3U5F_080, IL_4CUX_081, IL_1FJG_054 | IL_1VX2_072, IL_3J7A_070 |
- Annotations
-
- (5)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.09 | Avg 0.28 | Max 0.63
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