Motif IL_31066.6 Version IL_31066.6 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2	break		3		4		5	1-5	2-3
1	IL_4W23_072	4W23	0.6303	2	2	18S ribosomal RNA	C	1700	G	1702	*	C	1833	A	1834	G	1836	cWW	cWW
2	IL_1FJG_054	1FJG	0.6224	2	A	SSU rRNA	C	1399	G	1401	*	C	1501	A	1502	G	1504	cWW	cWW
3	IL_4CUX_081	4CUX	0.1668	2	2	18S RRNA	C	1636	G	1638	*	C	1764	A	1765	G	1767	ncWW	cWW
4	IL_4BPP_080	4BPP	0.1344	2	A	18S RRNA	C	1608	G	1610	*	C	1717	A	1718	G	1720	cWW	cWW
5	IL_3J7A_070	3J7A	0.0000	2	A	SSU rRNA	C	1933	G	1935	*	C	2056	A	2057	G	2059	cWW	cWW
6	IL_2AW7_060	2AW7	0.0887	2	A	16S ribosomal RNA	C	1399	G	1401	*	C	1501	A	1502	G	1504	cWW	cWW
7	IL_3U5F_080	3U5F	0.1151	2	6	18S rRNA	C	1636	G	1638	*	C	1764	A	1765	G	1767	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CCG*CAAG	7

Non-Watson-Crick part of the motif

Sequence	Counts
C*AA	7

Release history

Release	1.18
Date	2014-10-07
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_31066.6	Only in the parent motif
IL_31066.5 Compare	IL_4CUX_081, IL_3J7A_070, IL_3U5F_080, IL_2AW7_060, IL_4BPP_080, IL_1FJG_054	IL_4W23_072	IL_1VX2_072

Children motifs

This motif has no children motifs.

Annotations: (7)
Basepair signature: cWW-R-cWW
Heat map statistics: Min 0.09 | Avg 0.32 | Max 0.64

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Coloring options: Nucleotide numbers

Motif IL_31066.6 Version IL_31066.6 of this group appears in releases 1.18 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_31066.6 Version IL_31066.6 of this group appears in releases 1.18 to 1.18

Download

Csv

Json