Motif IL_31066.6 Version IL_31066.6 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4W23_072 | 4W23 | 0.6303 | 2 | 2 | SSU rRNA | C | 1700 | G | 1702 | * | C | 1833 | A | 1834 | G | 1836 | cWW | cWW |
| 2 | IL_1FJG_054 | 1FJG | 0.6224 | 2 | A | SSU rRNA | C | 1399 | G | 1401 | * | C | 1501 | A | 1502 | G | 1504 | cWW | cWW |
| 3 | IL_4CUX_081 | 4CUX | 0.1668 | 2 | 2 | SSU rRNA | C | 1636 | G | 1638 | * | C | 1764 | A | 1765 | G | 1767 | ncWW | cWW |
| 4 | IL_4BPP_080 | 4BPP | 0.1344 | 2 | A | SSU rRNA | C | 1608 | G | 1610 | * | C | 1717 | A | 1718 | G | 1720 | cWW | cWW |
| 5 | IL_3J7A_070 | 3J7A | 0.0000 | 2 | A | SSU rRNA | C | 1933 | G | 1935 | * | C | 2056 | A | 2057 | G | 2059 | cWW | cWW |
| 6 | IL_2AW7_060 | 2AW7 | 0.0887 | 2 | A | SSU rRNA | C | 1399 | G | 1401 | * | C | 1501 | A | 1502 | G | 1504 | cWW | cWW |
| 7 | IL_3U5F_080 | 3U5F | 0.1151 | 2 | 6 | SSU rRNA | C | 1636 | G | 1638 | * | C | 1764 | A | 1765 | G | 1767 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCG*CAAG | 7 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| C*AA | 7 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_31066.6 | Only in the parent motif |
|---|---|---|---|
| IL_31066.5 Compare | IL_4CUX_081, IL_3J7A_070, IL_3U5F_080, IL_2AW7_060, IL_4BPP_080, IL_1FJG_054 | IL_4W23_072 | IL_1VX2_072 |
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.09 | Avg 0.32 | Max 0.64
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