Motif IL_31461.3 Version IL_31461.3 of this group appears in releases 3.91 to 3.92

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7	1-3	1-7	2-6	4-7	5-6
1	IL_5J7L_016	5J7L	0.7303	C-loop	AA	SSU rRNA	U	304	G	305	A	306	C	307	C	308	*	G	292	G	293		cWW			cWW
2	IL_6CZR_125	6CZR	0.7121	C-loop	1a	SSU rRNA	U	300	G	301	G	302	C	303	C	304	*	G	288	G	289		cWW			cWW
3	IL_4LFB_013	4LFB	0.6647	C-loop	A	SSU rRNA	U	304	G	305	G	306	C	307	C	308	*	G	292	G	293		cWW			cWW
4	IL_5J7L_018	5J7L	0.1139	C-loop	AA	SSU rRNA	A	371	C	372	A	373	A	374	U	375	*	A	389	U	390	cSH	cWW	tWH	cWS	cWW
5	IL_8C3A_416	8C3A	0.0687	C-loop	CM	SSU rRNA	C	441	C	442	A	443	A	444	U	445	*	A	458	G	459	cSH	cWW	tWH	cWS	cWW
6	IL_8P9A_397	8P9A	0.0000	C-loop	sR	SSU rRNA	C	443	C	444	A	445	A	446	U	447	*	A	460	G	461	cSH	cWW	tWH	cWS	cWW
7	IL_6CZR_127	6CZR	0.1529	C-loop	1a	SSU rRNA	G	367	C	368	A	369	A	370	U	371	*	A	385	C	386		cWW	tWH	cWS	cWW
8	IL_4LFB_015	4LFB	0.1739	C-loop	A	SSU rRNA	G	371	C	372	A	373	A	374	U	375	*	A	389	C	390		cWW	ntWH	cWS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGGCC*GG	2
CCAAU*AG	2
GCAAU*AC	2
UGACC*GG	1
ACAAU*AU	1

Non-Watson-Crick part of the motif

Sequence	Counts
CAA*	5
GGC*	2
GAC*	1

Release history

Release	3.91	3.92
Date	2024-12-04	2025-01-01
Status	Updated, 1 parent	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: C-loop (8)
Basepair signature: cWW-cWS-tWH-cWW-L
Heat map statistics: Min 0.07 | Avg 0.39 | Max 0.75

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Coloring options: Nucleotide numbers

Motif IL_31461.3 Version IL_31461.3 of this group appears in releases 3.91 to 3.92 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_31461.3 Version IL_31461.3 of this group appears in releases 3.91 to 3.92

Download

Csv

Json