Motif IL_31531.2 Version IL_31531.2 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3NDB_006 | 3NDB | 0.6625 | 0 | M | SRP RNA | U | 175 | A | 176 | A | 177 | C | 178 | * | G | 152 | A | 153 | G | 154 | cWW | cWW | |
| 2 | IL_5J7L_065 | 5J7L | 0.5328 | 0 | AA | SSU rRNA | U | 1445 | A | 1446 | A | 1447 | C | 1448 | * | G | 1455 | A | 1456 | G | 1457 | cWW | cWW | |
| 3 | IL_4WF9_107 | 4WF9 | 0.5721 | 0 | X | LSU rRNA | U | 2891 | G | 2892 | A | 2893 | C | 2894 | * | G | 2863 | A | 2864 | G | 2865 | cWW | cWW | |
| 4 | IL_7A0S_100 | 7A0S | 0.4657 | 0 | Decoding loop related | X | LSU rRNA | G | 2846 | G | 2847 | A | 2848 | C | 2849 | * | G | 2818 | G | 2819 | C | 2820 | cWW | cWW |
| 5 | IL_5J7L_364 | 5J7L | 0.5008 | 0 | AA | SSU rRNA | G | 1491 | A | 1492 | A | 1493 | G | 1494 | * | 5MC | 1407 | A | 1408 | C | 1409 | cWW | cWW | |
| 6 | IL_4ZC7_003 | 4ZC7 | 0.1845 | 0 | Decoding loop related | A+B | RNA duplex | A | 16 | A | 17 | A | 18 | G | 19 | * | C | 30 | G | 31 | U | 32 | ncWW | cWW |
| 7 | IL_2O3X_002 | 2O3X | 0.1040 | 0 | Decoding loop related | B+A | RNA (23-mer) | G | 39 | A | 40 | A | 41 | G | 42 | * | C | 7 | A | 8 | C | 9 | cWW | cWW |
| 8 | IL_2ET8_002 | 2ET8 | 0.0000 | 0 | Decoding loop related | B+A | RNA (22-mer) | G | 38 | A | 39 | A | 40 | G | 41 | * | C | 6 | A | 7 | C | 8 | cWW | cWW |
| 9 | IL_4LFB_070 | 4LFB | 0.2450 | 0 | A | SSU rRNA | G | 1491 | A | 1492 | A | 1493 | G | 1494 | * | 5MC | 1407 | A | 1408 | C | 1409 | cWW | cWW | |
| 10 | IL_4PDQ_002 | 4PDQ | 0.3274 | 0 | B+A | RNA (23-mer) | G | 39 | A | 40 | A | 41 | G | 42 | * | C | 7 | A | 8 | C | 9 | cWW | cWW | |
| 11 | IL_3C3Z_003 | 3C3Z | 0.3622 | 0 | Decoding loop related | B+A | HIV-1 subtype F genomic RNA | G | 7 | A | 8 | A | 9 | G | 10 | * | C | 15 | A | 16 | C | 17 | cWW | cWW |
| 12 | IL_1T0E_001 | 1T0E | 0.3925 | 0 | Decoding loop related | A+C | RNA (18-mer) + RNA (17-mer) | G | 7 | A | 8||A | A | 9||A | G | 10||A | * | C | 16 | A | 17 | C | 18 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAG*CAC | 4 |
| UAAC*GAG | 2 |
| GAAG*(5MC)AC | 2 |
| UGAC*GAG | 1 |
| GGAC*GGC | 1 |
| AAAG*CGU | 1 |
| CAC*GAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*A | 8 |
| GA*A | 1 |
| GA*G | 1 |
| AA*G | 1 |
| A*AA | 1 |
- Annotations
-
- Decoding loop related (6)
- (6)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.10 | Avg 0.49 | Max 0.88
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