Motif IL_32889.1 Version IL_32889.1 of this group appears in releases 3.7 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4R0D_002 | 4R0D | 0.5362 | 4 | A | Group II catalytic intron | G | 103 | U | 108 | C | 109 | * | G | 74 | A | 75 | C | 76 | cWW | cWW | cWW | |
| 2 | IL_4V8P_265 | 4V8P | 0.0000 | 0 | Isolated non-canonical cWW pair (H) | D1 | LSU rRNA | G | 2812 | C | 2813 | U | 2814 | * | G | 2851 | A | 2852 | U | 2853 | cWW | cWWa | cWW |
| 3 | IL_2GDI_001 | 2GDI | 0.4658 | 1 | X | TPP riboswitch | G | 18 | G | 19 | U | 20 | * | A | 45 | A | 47 | C | 48 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGCUC*GAC | 1 |
| GCU*GAU | 1 |
| GGU*AUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGCU*A | 1 |
| C*A | 1 |
| G*UA | 1 |
- Annotations
-
- (2)
- Isolated non-canonical cWW pair (H) (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.47 | Avg 0.37 | Max 0.65
Coloring options: