Motif IL_34626.1 Version IL_34626.1 of this group appears in releases 3.2 to 3.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_003 | 5J7L | 0.3287 | 2 | AA | SSU rRNA | C | 47 | U | 49 | A | 50 | C | 52 | * | G | 359 | G | 360 | G | 361 | cWW | ntSs | cWW | |
| 2 | IL_4LFB_003 | 4LFB | 0.3064 | 2 | A | SSU rRNA | C | 47 | U | 49 | A | 50 | G | 52 | * | U | 359 | A | 360 | G | 361 | cWW | cWW | ||
| 3 | IL_4V88_387 | 4V88 | 0.0000 | 3 | A6 | SSU rRNA | G | 42 | U | 45 | A | 46 | G | 48 | * | C | 431 | G | 432 | C | 433 | cWW | ntSs | cWW | |
| 4 | IL_4V84_070 | 4V84 | 0.9212 | 0 | AV | RNA (34-MER) | U | 6180 | C | 6181 | A | 6182 | G | 6183 | * | C | 6194 | G | 6195 | A | 6196 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUAAC*GGG | 1 |
| CCUAAG*UAG | 1 |
| GAUUAAG*CGC | 1 |
| UCAG*CGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAA*G | 1 |
| CUAA*A | 1 |
| AUUAA*G | 1 |
| CA*G | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.31 | Avg 0.47 | Max 0.96
Coloring options: