Motif IL_34626.2 Version IL_34626.2 of this group appears in releases 3.7 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_387 | 4V88 | 0.3064 | 3 | A6 | SSU rRNA | G | 42 | U | 45 | A | 46 | G | 48 | * | C | 431 | G | 432 | C | 433 | cWW | ntSs | cWW | |
| 2 | IL_4LFB_003 | 4LFB | 0.0000 | 2 | A | SSU rRNA | C | 47 | U | 49 | A | 50 | G | 52 | * | U | 359 | A | 360 | G | 361 | cWW | cWW | ||
| 3 | IL_5J7L_003 | 5J7L | 0.3169 | 2 | AA | SSU rRNA | C | 47 | U | 49 | A | 50 | C | 52 | * | G | 359 | G | 360 | G | 361 | cWW | ntSs | cWW | |
| 4 | IL_5B2P_002 | 5B2P | 0.8796 | 0 | Isolated non-canonical cWW pair | B | Guide RNA | G | 28 | U | 29 | U | 30 | G | 31 | * | C | 44 | U | 45 | C | 46 | cWW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUUAAG*CGC | 1 |
| CCUAAG*UAG | 1 |
| CCUAAC*GGG | 1 |
| GUUG*CUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUAA*G | 1 |
| CUAA*A | 1 |
| CUAA*G | 1 |
| UU*U | 1 |
Release history
| Release | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Isolated non-canonical cWW pair (1)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.31 | Avg 0.45 | Max 0.90
Coloring options: