Motif IL_34915.1 Version IL_34915.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 3-4 | 3-8 | 4-8 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1U6B_003 | 1U6B | 0.2157 | 0 | Receptor of 11-nt loop-receptor motif | B | 197-MER | C | 61 | U | 62 | A | 63 | A | 64 | G | 65 | * | U | 80 | A | 81 | U | 82 | G | 83 | cWW | tWH | cSH | ncWW | cWW | |
| 2 | IL_3T4B_002 | 3T4B | 0.0000 | 0 | Receptor of 11-nt loop-receptor motif | A | HCV IRES pseudoknot domain plus crystallization module | C | 2 | U | 3 | A | 4 | A | 5 | G | 6 | * | U | 17 | A | 18 | U | 19 | G | 20 | cWW | tWH | cSH | cWW | cWW | |
| 3 | IL_3IGI_012 | 3IGI | 0.1143 | 0 | Receptor of 11-nt loop-receptor motif | A | Group IIC intron | C | 346 | U | 347 | A | 348 | A | 349 | G | 350 | * | U | 332 | A | 333 | U | 334 | G | 335 | cWW | tWH | cSH | ncWW | cWW | |
| 4 | IL_4WZJ_021 | 4WZJ | 0.1691 | 0 | Receptor of 11-nt loop-receptor motif | XXX | U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor. | C | 56 | U | 57 | A | 58 | A | 59 | G | 60 | * | U | 46 | A | 47 | U | 48 | G | 49 | cWW | tWH | cSH | ntSH | cWW | |
| 5 | IL_1NBS_008 | 1NBS | 0.2887 | 0 | Receptor of 11-nt loop-receptor motif | B | RNase P class B | C | 146 | U | 147 | A | 148 | C | 149 | G | 150 | * | U | 159 | A | 160 | U | 161 | G | 162 | cWW | tWH | ncSH | cWW | ||
| 6 | IL_1KXK_002 | 1KXK | 0.2674 | 0 | Receptor of 11-nt loop-receptor motif | A | ai5g group II Self-splicing intron | C | 15 | U | 16 | A | 17 | A | 18 | G | 19 | * | U | 54 | A | 55 | U | 56 | G | 57 | cWW | tWH | cSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAG*UAUG | 5 |
| CUACG*UAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*AU | 5 |
| UAC*AU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Receptor of 11-nt loop-receptor motif (6)
- Basepair signature
- cWW-R-tWH-cSH-cWW
- Heat map statistics
- Min 0.11 | Avg 0.20 | Max 0.34
Coloring options: