Motif IL_36661.1 Version IL_36661.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-4 | 3-5 | 3-7 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8OI5_009 | 8OI5 | 0.5341 | 0 | 1 | LSU rRNA | G | 161 | U | 162 | A | 163 | U | 164 | C | 165 | * | G | 256 | U | 257 | U | 258 | C | 259 | cWW | cwW | ncWw | cWW | ||||
| 2 | IL_8OI5_103 | 8OI5 | 0.4240 | 0 | 1 | LSU rRNA | G | 2835 | A | 2836 | U | 2837 | U | 2838 | C | 2839 | * | G | 2795 | G | 2796 | C | 2797 | U | 2798 | cWW | cWWa | ncSH | ncWW | cWW | |||
| 3 | IL_1J2B_001 | 1J2B | 0.0000 | 0 | C | tRNA(Val) | G | 943 | G | 944 | A | 945 | G | 946 | G | 947 | * | C | 926 | G | 927 | C | 928 | C | 929 | cWW | cWW | ||||||
| 4 | IL_1MFQ_001 | 1MFQ | 0.7185 | 0 | A | SRP RNA | C | 230 | A | 231 | G | 232 | U | 233 | A | 234 | * | U | 117 | A | 118 | A | 119 | G | 120 | cWW | cWW | ||||||
| 5 | IL_7A0S_058 | 7A0S | 0.6943 | 1 | X | LSU rRNA | G | 1503 | G | 1504 | U | 1505 | A | 1507 | G | 1508 | * | C | 1514 | U | 1515 | A | 1516 | C | 1517 | cWW | cWW | ncWH | ncWW | ncWW | |||
| 6 | IL_8P9A_455 | 8P9A | 0.8147 | 0 | Non canonical cWW and near pair (H) | sR | SSU rRNA | A | 1753 | A | 1754 | A | 1755 | A | 1756 | G | 1757 | * | C | 1644 | G | 1645 | C | 1646 | U | 1647 | cWW | ntWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAUC*GUUC | 1 |
| GAUUC*GGCU | 1 |
| GGAGG*CGCC | 1 |
| CAGUA*UAAG | 1 |
| GGUCAG*CUAC | 1 |
| AAAAG*CGCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAU*UU | 1 |
| AUU*GC | 1 |
| GAG*GC | 1 |
| AGU*AA | 1 |
| GUCA*UA | 1 |
| AAA*GC | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Non canonical cWW and near pair (H) (1)
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Heat map statistics
- Min 0.42 | Avg 0.60 | Max 0.94
Coloring options: