Motif IL_36940.4 Version IL_36940.4 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5V1K_003 | 5V1K | 0.4005 | 0 | B+A | RNA (12-mer) | C | 203 | G | 204 | A | 205 | A | 206 | * | 5BU | 107||A | 8RJ | 108||A | A | 109 | G | 110 | cWW | tSH | tWW | cWW | |
| 2 | IL_5UNE_005 | 5UNE | 0.0000 | 0 | tSH-tHW | A+B | RNA (47-MER) | G | 21 | C | 22 | A | 23 | C | 24 | * | G | 21 | C | 22 | A | 23 | C | 24 | cWW | ncSW | ntHW | cWW |
| 3 | IL_7LO9_003 | 7LO9 | 0.2120 | 0 | A+B | Chains: A,B,C,D | C | 3 | G | 4 | ZAD | 5 | A | 6 | * | 5BU | 7 | U | 8 | A | 9 | G | 10 | cWW | tSH | ntWW | cWW | |
| 4 | IL_7LO9_004 | 7LO9 | 0.4196 | 0 | B+A | Chains: A,B,C,D | C | 3 | G | 4 | ZAD | 5 | A | 6 | * | 5BU | 7 | U | 8 | A | 9 | G | 10 | cWW | tSH | tWW | cWW | |
| 5 | IL_5J7L_327 | 5J7L | 0.3788 | 0 | Other IL | DA | LSU rRNA | A | 2183 | A | 2184 | U | 2185 | G | 2186 | * | C | 2103 | C | 2104 | U | 2105 | U | 2106 | ncWW | ntSH | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG(ZAD)A*(5BU)UAG | 2 |
| CGAA*(5BU)(8RJ)AG | 1 |
| GCAC*GCAC | 1 |
| AAUG*CCUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G(ZAD)*UA | 2 |
| GA*(8RJ)A | 1 |
| CA*CA | 1 |
| AU*CU | 1 |
- Annotations
-
- (3)
- Other IL (1)
- tSH-tHW (1)
- Basepair signature
- cWW-tSH-tWW-cWW
- Heat map statistics
- Min 0.21 | Avg 0.35 | Max 0.61
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