Motif IL_38253.1 Version IL_38253.1 of this group appears in releases 4.4 to 4.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9LKF_002 | 9LKF | 0.1115 | 1 | A | Purine riboswitch | C | 58 | C | 59 | A | 61 | G | 62 | * | C | 40 | A | 41 | G | 42 | cWW | tWW | cWW | |
| 2 | IL_9V4U_002 | 9V4U | 0.0955 | 1 | A | Purine riboswitch | C | 58 | C | 59 | A | 61 | G | 62 | * | C | 40 | A | 41 | G | 42 | cWW | cWW | ||
| 3 | IL_9LKE_002 | 9LKE | 0.0000 | 1 | A | Purine riboswitch | C | 58 | C | 59 | A | 61 | G | 62 | * | C | 40 | A | 41 | G | 42 | cWW | tWW | cWW | |
| 4 | IL_9IWF_002 | 9IWF | 0.1380 | 1 | B | Purine riboswitch | C | 58 | C | 59 | A | 61 | G | 62 | * | C | 40 | A | 41 | G | 42 | cWW | ntWW | cWW | |
| 5 | IL_4PMI_007 | 4PMI | 0.3895 | 1 | A | Rev-Response-Element RNA | U | 41 | A | 42 | A | 44 | U | 45 | * | A | 75 | G | 76 | G | 77 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCCAG*CAG | 4 |
| UAUAU*AGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCA*A | 4 |
| AUA*G | 1 |
Release history
| Release | 4.4 |
|---|---|
| Date | 2025-12-03 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-tWW-L-cWW
- Heat map statistics
- Min 0.10 | Avg 0.19 | Max 0.40
Coloring options: