Motif IL_38634.1 Version IL_38634.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3BNR_011 | 3BNR | 0.9702 | 1 | C+D | A site of human mitochondrial ribosome, chain one + A site of human mitochondrial ribosome, chain three | G | 15 | C | 16 | A | 17 | G | 19 | * | C | 5 | A | 6 | C | 7 | C | 8 | cWW | cWW | |||
| 2 | IL_2GDI_004 | 2GDI | 0.0000 | 2 | cWH basepair and non-canonical AC | X | TPP riboswitch | G | 76 | C | 77 | G | 78 | A | 80 | * | U | 59 | G | 60 | A | 61 | C | 63 | cWW | cHW | cWW | |
| 3 | IL_3K0J_003 | 3K0J | 0.5923 | 2 | cWH basepair and non-canonical AC | E | RNA (87-MER) | U | 59 | G | 60 | A | 61 | C | 63 | * | G | 76 | C | 77 | G | 78 | A | 80 | cWW | cWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAAG*CACC | 1 |
| GCGUA*UGAUC | 1 |
| UGAUC*GCGUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAA*AC | 1 |
| CGU*GAU | 1 |
| GAU*CGU | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- cWH basepair and non-canonical AC (2)
- (1)
- Basepair signature
- cWW-L-R-R-L-cWW
- Heat map statistics
- Min 0.59 | Avg 0.56 | Max 0.97
Coloring options: