Motif IL_38634.4 Version IL_38634.4 of this group appears in releases 3.58 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3K0J_003 | 3K0J | 0.1641 | 2 | cWH basepair and non-canonical AC | E | RNA (87-MER) | U | 59 | G | 60 | A | 61 | C | 63 | * | G | 76 | C | 77 | G | 78 | A | 80 | cWW | cWH | cWW | |
| 2 | IL_3D2V_003 | 3D2V | 0.0000 | 2 | cWH basepair and non-canonical AC | A | TPP riboswitch (THI element) | U | 47 | G | 48 | A | 49 | C | 51 | * | G | 64 | C | 65 | G | 66 | A | 68 | cWW | cWH | cWW | |
| 3 | IL_6DLR_005 | 6DLR | 0.8588 | 1 | tWW and near cWH | A | Guanidine-I riboswitch | G | 77 | G | 78 | A | 79 | G | 80 | * | C | 92 | A | 93 | G | 95 | C | 96 | cWW | cBW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAUC*GCGUA | 1 |
| UGAAC*GCGCA | 1 |
| GGAG*CAGGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAU*CGU | 1 |
| GAA*CGC | 1 |
| GA*AGG | 1 |
- Annotations
-
- cWH basepair and non-canonical AC (2)
- tWW and near cWH (1)
- Basepair signature
- cWW-cWH-L-R-cWW
- Heat map statistics
- Min 0.16 | Avg 0.42 | Max 0.88
Coloring options: