Motif IL_39175.1 Version IL_39175.1 of this group appears in releases 1.14 to 1.18
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-3 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1VW3_045 | 1VW3 | 0.0000 | 0 | A | 21S ribosomal RNA | A | 1492 | U | 1493 | * | A | 1515 | U | 1516 | A | 1517 | A | 1518 | A | 1519 | C | 1520 | U | 1521 | cWW | cWW |
2 | IL_3Q1Q_002 | 3Q1Q | 0.9390 | 1 | B | RNase P RNA | U | 216 | G | 217 | * | U | 61 | G | 63 | A | 64 | G | 65 | C | 66 | G | 67 | G | 68 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AU*AUAAACU | 1 |
UG*UGGAGCGG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
*UAAAC | 1 |
*GGAGCG | 1 |
Release history
Release | 1.14 | 1.15 | 1.17 | 1.18 |
---|---|---|---|---|
Date | 2014-04-27 | 2014-06-20 | 2014-09-04 | 2014-10-07 |
Status | New id, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_39175.1 | Only in the parent motif |
---|---|---|---|
IL_71942.1 Compare | IL_3Q1Q_002 | IL_1VW3_045 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R-R-R-cWW
- Heat map statistics
- Min 0.94 | Avg 0.47 | Max 0.94
Coloring options: