Motif IL_39512.1 Version IL_39512.1 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 3-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6VMY_001 | 6VMY | 0.6954 | 0 | A | Cobalamin riboswitch | C | 230 | A | 231 | G | 232 | * | U | 219 | C | 220 | C | 221 | G | 222 | cWW | ntHW | cWW |
| 2 | IL_3PDR_002 | 3PDR | 0.0000 | 1 | X | M-box riboswitch (ykoK leader) | U | 23 | A | 25 | G | 26 | * | U | 159 | C | 160 | U | 161 | A | 162 | cWW | tHS | cWW |
| 3 | IL_3V7E_005 | 3V7E | 0.8099 | 3 | C | SAM-I riboswitch | U | 96 | G | 100 | C | 101 | * | G | 114 | A | 115 | A | 116 | A | 117 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAG*UCCG | 1 |
| UUAG*UCUA | 1 |
| UCCUGC*GAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*CC | 1 |
| UA*CU | 1 |
| CCUG*AA | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-R-cWW
- Heat map statistics
- Min 0.70 | Avg 0.55 | Max 0.95
Coloring options: