Motif IL_40508.2 Version IL_40508.2 of this group appears in releases 3.28 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_018 | 5TBW | 0.6236 | 1 | Single bulged A | 1 | LSU rRNA | U | 512 | G | 513 | * | C | 577 | G | 579 | cWW | cWW |
| 2 | IL_4WF9_112 | 4WF9 | 0.3345 | 1 | Major groove intercalation | Y | 5S rRNA | C | 15 | A | 16 | * | U | 63 | G | 65 | cWW | cWW |
| 3 | IL_4Y4O_238 | 4Y4O | 0.0000 | 1 | Single bulged A (H) | 2A | LSU rRNA | C | 1499 | G | 1500 | * | U | 1489 | G | 1491 | cWW | cWW |
| 4 | IL_2OZB_001 | 2OZB | 0.2755 | 1 | Single bulged A | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | C | 47 | G | 48 | * | U | 24 | G | 26 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*UAG | 2 |
| UG*CAG | 1 |
| CA*UAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A | 4 |
Release history
| Release | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Single bulged A (2)
- Major groove intercalation (1)
- Single bulged A (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.28 | Avg 0.40 | Max 0.84
Coloring options: