Motif IL_40508.3 Version IL_40508.3 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_018 | 5TBW | 0.6668 | 1 | Single bulged A | 1 | LSU rRNA | U | 512 | G | 513 | * | C | 577 | G | 579 | cWW | cWW |
| 2 | IL_4WF9_112 | 4WF9 | 0.3055 | 1 | Major groove intercalation | Y | 5S rRNA | C | 15 | A | 16 | * | U | 63 | G | 65 | cWW | cWW |
| 3 | IL_4Y4O_238 | 4Y4O | 0.1854 | 1 | Single bulged A (H) | 2A | LSU rRNA | C | 1499 | G | 1500 | * | U | 1489 | G | 1491 | cWW | cWW |
| 4 | IL_5J7L_355 | 5J7L | 0.0000 | 1 | Major groove intercalation | DB | 5S rRNA | C | 17 | G | 18 | * | U | 65 | G | 67 | cWW | cWW |
| 5 | IL_2OZB_001 | 2OZB | 0.2372 | 1 | Single bulged A | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | C | 47 | G | 48 | * | U | 24 | G | 26 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*UAG | 3 |
| UG*CAG | 1 |
| CA*UAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A | 5 |
- Annotations
-
- Single bulged A (2)
- Major groove intercalation (2)
- Single bulged A (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.19 | Avg 0.37 | Max 0.84
Coloring options: