Motif IL_40508.4 Version IL_40508.4 of this group appears in releases 3.54 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2OZB_001 | 2OZB | 0.2372 | 1 | Single bulged A | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | U | 24 | G | 26 | * | C | 47 | G | 48 | cWW | cWW |
| 2 | IL_7RQB_062 | 7RQB | 0.1927 | 1 | Single bulged A | 1A | LSU rRNA | U | 1489 | G | 1491 | * | C | 1499 | G | 1500 | cWW | cWW |
| 3 | IL_5J7L_355 | 5J7L | 0.0000 | 1 | Major groove intercalation | DB | 5S rRNA | U | 65 | G | 67 | * | C | 17 | G | 18 | cWW | cWW |
| 4 | IL_4WF9_112 | 4WF9 | 0.3055 | 1 | Major groove intercalation | Y | 5S rRNA | U | 63 | G | 65 | * | C | 15 | A | 16 | cWW | cWW |
| 5 | IL_4V9F_101 | 4V9F | 0.3349 | 1 | Major groove intercalation | 9 | 5S rRNA | C | 64 | G | 66 | * | C | 15 | G | 16 | cWW | cWW |
| 6 | IL_5TBW_018 | 5TBW | 0.6668 | 1 | Single bulged A | 1 | LSU rRNA | C | 577 | G | 579 | * | U | 512 | G | 513 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAG*CG | 3 |
| UAG*CA | 1 |
| CAG*CG | 1 |
| CAG*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 6 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Single bulged A (3)
- Major groove intercalation (3)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.19 | Avg 0.37 | Max 0.84
Coloring options: