Motif IL_43297.1 Version IL_43297.1 of this group appears in releases 3.54 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4J39_001 | 4J39 | 0.8783 | 1 | Isolated non-canonical cWW pair | B | RNA (19-mer) | G | 9 | C | 11 | * | G | 9||||4_555 | C | 10||||4_555 | C | 11||||4_555 | cWW | cWW |
| 2 | IL_5IBB_340 | 5IBB | 0.8133 | 0 | Single base bend | 1L | tRNA | G | 50 | C | 51 | * | G | 63 | U | 64 | C | 65 | cWW | cWW |
| 3 | IL_4R4V_005 | 4R4V | 0.0000 | 1 | Intercalated cWS | A | VS ribozyme RNA | C | 755 | A | 756 | * | U | 719 | A | 720 | G | 722 | cWW | cWW |
| 4 | IL_4R4V_011 | 4R4V | 0.0000 | 1 | Intercalated cWS | A | VS ribozyme RNA | C | 755||||7_556 | A | 756||||7_556 | * | U | 719||||7_556 | A | 720||||7_556 | G | 722||||7_556 | cWW | cWW |
| 5 | IL_3WBM_004 | 3WBM | 0.6493 | 0 | Other IL | X+Y | RNA (25-MER) | U | 23 | C | 24 | * | G | 2 | U | 3 | A | 4 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CA*UAAG | 2 |
| GCC*GCC | 1 |
| GC*GUC | 1 |
| UC*GUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *U | 2 |
| *AA | 2 |
| C*C | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Intercalated cWS (2)
- Other IL (1)
- Isolated non-canonical cWW pair (1)
- Single base bend (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.65 | Avg 0.58 | Max 0.93
Coloring options: