Motif IL_43727.1 Version IL_43727.1 of this group appears in releases 1.17 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 2-8 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZY6_001 | 2ZY6 | 0.8550 | 0 | tSH-tHW | A | phenylalanyl transfer RNA | A | 7 | U | 8 | A | 9 | G | 10 | * | C | 25 | G | 26 | A | 27 | G | 28 | U | 29 | cWW | tWH | ntHS | cWW | |
| 2 | IL_2QBG_075 | 2QBG | 0.2396 | 0 | B | 23S rRNA | U | 1864 | U | 1865 | A | 1866 | G | 1867 | * | C | 1874 | G | 1875 | A | 1876 | A | 1877 | G | 1878 | cWW | tWH | tHS | cWW | ||
| 3 | IL_1FJG_061 | 1FJG | 0.0000 | 0 | UAA/GAN variation (H) | A | SSU rRNA | C | 1466 | G | 1467 | A | 1468 | G | 1469 | * | C | 1431 | G | 1432 | A | 1433 | A | 1434 | G | 1435 | cWW | tSH | tHS | cWW | |
| 4 | IL_2QBG_061 | 2QBG | 0.1641 | 0 | B | 23S rRNA | C | 1526 | G | 1527 | A | 1528 | G | 1529 | * | U | 1542 | G | 1543 | A | 1544 | A | 1545 | G | 1546 | cWW | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUAG*CGAGU | 1 |
| UUAG*CGAAG | 1 |
| CGAG*CGAAG | 1 |
| CGAG*UGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*GAA | 2 |
| UA*GAG | 1 |
| UA*GAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_43727.1 | Only in the parent motif |
|---|---|---|---|
| IL_03337.1 Compare | IL_2QBG_061, IL_1FJG_061 | IL_2ZY6_001, IL_2QBG_075 | IL_4IOA_008 |
| IL_68457.1 Compare | IL_2ZY6_001 | IL_2QBG_061, IL_1FJG_061, IL_2QBG_075 | |
| IL_21427.1 Compare | IL_2QBG_075 | IL_2QBG_061, IL_1FJG_061, IL_2ZY6_001 | IL_3U5F_007, IL_4CUV_104, IL_4CUX_007, IL_4BPP_007 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- UAA/GAN variation (H) (1)
- tSH-tHW (1)
- Basepair signature
- cWW-tSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.16 | Avg 0.41 | Max 0.86
Coloring options: