Motif IL_21427.1 Version IL_21427.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 2-8 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUV_104 | 4CUV | 0.8090 | 0 | 1 | LSU rRNA | G | 2435 | U | 2436 | G | 2437 | A | 2438 | * | U | 2508 | U | 2509 | A | 2510 | C | 2511 | C | 2512 | cWW | ncWW | ncWW | cWW | |
| 2 | IL_2QBG_075 | 2QBG | 0.3695 | 0 | B | LSU rRNA | U | 1864 | U | 1865 | A | 1866 | G | 1867 | * | C | 1874 | G | 1875 | A | 1876 | A | 1877 | G | 1878 | cWW | tWH | tHS | cWW | |
| 3 | IL_4BPP_007 | 4BPP | 0.0000 | 1 | A | SSU rRNA | U | 63 | U | 64 | A | 66 | G | 67 | * | C | 78 | G | 79 | A | 80 | A | 81 | A | 82 | cWW | tWH | tHS | cWW | |
| 4 | IL_3U5F_007 | 3U5F | 0.2322 | 2 | 6 | SSU rRNA | U | 64 | A | 65 | A | 67 | G | 69 | * | U | 82 | G | 83 | A | 84 | A | 85 | A | 86 | cWW | tHS | cWW | ||
| 5 | IL_4CUX_007 | 4CUX | 0.3189 | 2 | 2 | SSU rRNA | U | 64 | A | 65 | A | 67 | G | 69 | * | U | 82 | G | 83 | A | 84 | A | 85 | A | 86 | cWW | ntHS | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAUAAG*UGAAA | 2 |
| GUGA*UUACC | 1 |
| UUAG*CGAAG | 1 |
| UUCAG*CGAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAA*GAA | 2 |
| UG*UAC | 1 |
| UA*GAA | 1 |
| UCA*GAA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_21427.1 | Only in the parent motif |
|---|---|---|---|
| IL_06180.1 Compare | IL_3U5F_007, IL_4BPP_007 | IL_4CUV_104, IL_4CUX_007, IL_2QBG_075 | IL_4A1B_075 |
| IL_22732.1 Compare | IL_2QBG_075 | IL_3U5F_007, IL_4CUV_104, IL_4CUX_007, IL_4BPP_007 | IL_2QBG_061, IL_1FJG_061, IL_2ZY6_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_21427.1 | Only in the child motif |
|---|---|---|---|
| IL_31555.7 Compare | IL_3U5F_007, IL_4CUX_007 | IL_4CUV_104, IL_4BPP_007, IL_2QBG_075 | IL_1VX6_125, IL_4A1B_026, IL_1GID_010, IL_1X8W_002, IL_4A1B_022, IL_3FS0_001, IL_3FTM_001, IL_4A1B_120, IL_1GID_003, IL_4FAW_010, IL_3J7A_006 |
| IL_43727.1 Compare | IL_2QBG_075 | IL_3U5F_007, IL_4CUV_104, IL_4CUX_007, IL_4BPP_007 | IL_2QBG_061, IL_1FJG_061, IL_2ZY6_001 |
| IL_10743.1 Compare | IL_4CUV_104 | IL_3U5F_007, IL_4CUX_007, IL_4BPP_007, IL_2QBG_075 | IL_1MFQ_001, IL_1VX2_015, IL_1U6B_004, IL_1J2B_001, IL_1VWW_129 |
| IL_37970.1 Compare | IL_4BPP_007 | IL_3U5F_007, IL_4CUV_104, IL_4CUX_007, IL_2QBG_075 |
- Annotations
-
- (5)
- Basepair signature
- cWW-R-tWH-tHS-cWW
- Heat map statistics
- Min 0.21 | Avg 0.44 | Max 0.93
Coloring options: