Motif IL_03337.1 Version IL_03337.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 2-8 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_008 | 4IOA | 0.8805 | 1 | X | LSU rRNA | C | 303 | A | 304 | A | 305 | G | 306 | * | C | 354 | G | 355 | A | 356 | A | 357 | G | 359 | cWW | tHW | ntHS | cWW | ||
| 2 | IL_1FJG_061 | 1FJG | 0.0000 | 0 | UAA/GAN variation (H) | A | SSU rRNA | C | 1466 | G | 1467 | A | 1468 | G | 1469 | * | C | 1431 | G | 1432 | A | 1433 | A | 1434 | G | 1435 | cWW | tSH | tHS | cWW | |
| 3 | IL_2QBG_061 | 2QBG | 0.1641 | 0 | B | LSU rRNA | C | 1526 | G | 1527 | A | 1528 | G | 1529 | * | U | 1542 | G | 1543 | A | 1544 | A | 1545 | G | 1546 | cWW | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAG*CGAACG | 1 |
| CGAG*CGAAG | 1 |
| CGAG*UGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*GAA | 2 |
| AA*GAAC | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_03337.1 | Only in the parent motif |
|---|---|---|---|
| IL_22732.1 Compare | IL_2QBG_061, IL_1FJG_061 | IL_4IOA_008 | IL_2ZY6_001, IL_2QBG_075 |
| IL_30067.1 Compare | IL_4IOA_008 | IL_2QBG_061, IL_1FJG_061 |
Children motifs
| Child motif | Common motif instances | Only in IL_03337.1 | Only in the child motif |
|---|---|---|---|
| IL_43727.1 Compare | IL_2QBG_061, IL_1FJG_061 | IL_4IOA_008 | IL_2ZY6_001, IL_2QBG_075 |
| IL_03030.1 Compare | IL_4IOA_008 | IL_2QBG_061, IL_1FJG_061 |
- Annotations
-
- (2)
- UAA/GAN variation (H) (1)
- Basepair signature
- cWW-tSH-R-tHS-cWW
- Heat map statistics
- Min 0.16 | Avg 0.43 | Max 0.90
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