Motif IL_03337.1 Version IL_03337.1 of this group appears in releases 1.15 to 1.15

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7		8		9	1-9	2-7	2-8	3-6	4-5
1	IL_4IOA_008	4IOA	0.8805	1		X	LSU rRNA	C	303	A	304	A	305	G	306	*	C	354	G	355	A	356	A	357	G	359	cWW	tHW		ntHS	cWW
2	IL_1FJG_061	1FJG	0.0000	0	UAA/GAN variation (H)	A	SSU rRNA	C	1466	G	1467	A	1468	G	1469	*	C	1431	G	1432	A	1433	A	1434	G	1435	cWW		tSH	tHS	cWW
3	IL_2QBG_061	2QBG	0.1641	0		B	23S rRNA	C	1526	G	1527	A	1528	G	1529	*	U	1542	G	1543	A	1544	A	1545	G	1546	cWW		tSH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAG*CGAACG	1
CGAG*CGAAG	1
CGAG*UGAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GA*GAA	2
AA*GAAC	1

Release history

Release	1.15
Date	2014-06-20
Status	New id, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_03337.1	Only in the parent motif
IL_22732.1 Compare	IL_2QBG_061, IL_1FJG_061	IL_4IOA_008	IL_2ZY6_001, IL_2QBG_075
IL_30067.1 Compare	IL_4IOA_008	IL_2QBG_061, IL_1FJG_061

Children motifs

Child motif	Common motif instances	Only in IL_03337.1	Only in the child motif
IL_43727.1 Compare	IL_2QBG_061, IL_1FJG_061	IL_4IOA_008	IL_2ZY6_001, IL_2QBG_075
IL_03030.1 Compare	IL_4IOA_008	IL_2QBG_061, IL_1FJG_061

Annotations: (2)
UAA/GAN variation (H) (1)
Basepair signature: cWW-tSH-R-tHS-cWW
Heat map statistics: Min 0.16 | Avg 0.43 | Max 0.90

Help

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/package.js

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corejmol.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__553549165211739__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__553549165211739__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://rna.bgsu.edu/rna3dhub/motif/view/IL_03337.1","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__553549165211739__","codePath":"https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"553549165211739","bgcolor":"white" }

setting document base to "https://rna.bgsu.edu/rna3dhub/motif/view/IL_03337.1"

Jmol Version: 14.4.4_2016.04.25 2016-04-26 17:41

java.vendor: Java2Script (HTML5)

java.version: 2016-04-21 14:47:41 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corescript.z.js

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__553549165211739__ ready

script 1 started

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/coretext.z.js

Script completed

Jmol script terminated

script 2 started

Script completed

Jmol script terminated

script 3 started

Script completed

Jmol script terminated

script 4 started

Script completed

Jmol script terminated

Coloring options: Nucleotide numbers

Motif IL_03337.1 Version IL_03337.1 of this group appears in releases 1.15 to 1.15 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_03337.1 Version IL_03337.1 of this group appears in releases 1.15 to 1.15

Download

Csv

Json