Motif IL_44067.5 Version IL_44067.5 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 3-13 | 4-11 | 5-10 | 6-9 | 7-8 | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1S72_001 | 1S72 | 0.1480 | 0 | Triple sheared with non-canonical cWW (H) | 0 | LSU rRNA | G | 21 | U | 22 | G | 23 | G | 24 | A | 25 | U | 26 | U | 27 | * | A | 516 | U | 517 | G | 518 | A | 519 | A | 520 | A | 521 | U | 522 | cWW | tSH | tSH | tHS | cWw | cWW | ||
2 | IL_3U5H_016 | 3U5H | 0.1362 | 0 | 8+5 | 5.8S rRNA | A | 13 | C | 14 | G | 15 | G | 16 | A | 17 | U | 18 | C | 19 | * | G | 404 | U | 405 | G | 406 | A | 407 | A | 408 | A | 409 | U | 410 | cWW | ntSH | tSH | ncSW | tSH | ntHS | cWw | cWW | |
3 | IL_4NVV_001 | 4NVV | 0.0000 | 0 | A | 23S Ribosomal RNA | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 535 | U | 536 | G | 537 | A | 538 | A | 539 | A | 540 | C | 541 | cWW | ntSH | tSH | tSH | ntHS | cWw | cWW | ||
4 | IL_4IOA_001 | 4IOA | 0.0731 | 0 | Triple sheared with non-canonical cWW (H) | X | LSU rRNA | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 520 | U | 521 | G | 522 | A | 523 | A | 524 | A | 525 | C | 526 | cWW | ntSH | tSH | tSH | tHS | cWw | cWW | |
5 | IL_2QBG_006 | 2QBG | 0.0904 | 0 | B | 23S rRNA | G | 24 | U | 25 | G | 26 | G | 27 | A | 28 | U | 29 | G | 30 | * | C | 510 | U | 511 | G | 512 | A | 513 | A | 514 | A | 515 | C | 516 | cWW | ntSH | tSH | ncSW | tSH | tHS | cWw | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUGGAUG*CUGAAAC | 3 |
GUGGAUU*AUGAAAU | 1 |
ACGGAUC*GUGAAAU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UGGAU*UGAAA | 4 |
CGGAU*UGAAA | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | Updated, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_44067.5 | Only in the parent motif |
---|---|---|---|
IL_44067.4 Compare | IL_2QBG_006, IL_1S72_001, IL_4IOA_001, IL_3U5H_016 | IL_4NVV_001 | IL_3V2F_001 |
Children motifs
Child motif | Common motif instances | Only in IL_44067.5 | Only in the child motif |
---|---|---|---|
IL_44067.6 Compare | IL_2QBG_006, IL_3U5H_016, IL_4NVV_001, IL_4IOA_001, IL_1S72_001 | IL_4CUV_019, IL_4CUX_013 |
- Annotations
-
- (3)
- Triple sheared with non-canonical cWW (H) (2)
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.10 | Max 0.16
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