#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 12 13 141-142-133-123-134-115-106-97-8
1 IL_1S72_0011S720.14800Triple sheared with non-canonical cWW (H)0 LSU rRNAG21U22G23G24A25U26U27*A516U517G518A519A520A521U522cWWtSHtSHtHScWwcWW
2 IL_3U5H_0163U5H0.136208+55.8S rRNAA13C14G15G16A17U18C19*G404U405G406A407A408A409U410cWWntSHtSHncSWtSHntHScWwcWW
3 IL_4NVV_0014NVV0.00000A23S Ribosomal RNAG24U25G26G27A28U29G30*C535U536G537A538A539A540C541cWWntSHtSHtSHntHScWwcWW
4 IL_4IOA_0014IOA0.07310Triple sheared with non-canonical cWW (H)X LSU rRNAG24U25G26G27A28U29G30*C520U521G522A523A524A525C526cWWntSHtSHtSHtHScWwcWW
5 IL_2QBG_0062QBG0.09040B23S rRNAG24U25G26G27A28U29G30*C510U511G512A513A514A515C516cWWntSHtSHncSWtSHtHScWwcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUGGAUG*CUGAAAC3
GUGGAUU*AUGAAAU1
ACGGAUC*GUGAAAU1
Non-Watson-Crick part of the motif
SequenceCounts
UGGAU*UGAAA4
CGGAU*UGAAA1

Release history

Release1.14
Date2014-04-27
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_44067.5Only in the parent motif
IL_44067.4
Compare
IL_2QBG_006, IL_1S72_001, IL_4IOA_001, IL_3U5H_016IL_4NVV_001IL_3V2F_001

Children motifs

Child motifCommon motif instancesOnly in IL_44067.5Only in the child motif
IL_44067.6
Compare
IL_2QBG_006, IL_3U5H_016, IL_4NVV_001, IL_4IOA_001, IL_1S72_001IL_4CUV_019, IL_4CUX_013
Annotations
  • (3)
  • Triple sheared with non-canonical cWW (H) (2)
  • Basepair signature
    cWW-L-R-tSH-tSH-tHS-cWW-cWW
    Heat map statistics
    Min 0.07 | Avg 0.10 | Max 0.16
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