Motif IL_44161.1 Version IL_44161.1 of this group appears in releases 3.8 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 2-8 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_008 | 4IOA | 0.8789 | 1 | X | LSU rRNA | C | 303 | A | 304 | A | 305 | G | 306 | * | C | 354 | G | 355 | A | 356 | A | 357 | G | 359 | cWW | tHW | ntHS | cWW | ||
| 2 | IL_4LFB_062 | 4LFB | 0.0000 | 0 | UAA/GAN variation | A | SSU rRNA | C | 1466 | G | 1467 | A | 1468 | G | 1469 | * | C | 1431 | G | 1432 | A | 1433 | A | 1434 | G | 1435 | cWW | tSH | tHS | cWW | |
| 3 | IL_5J7L_303 | 5J7L | 0.2049 | 0 | UAA/GAN variation | DA | LSU rRNA | C | 1526 | G | 1527 | A | 1528 | G | 1529 | * | U | 1542 | G | 1543 | A | 1544 | A | 1545 | G | 1546 | cWW | tSH | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAG*CGAACG | 1 |
| CGAG*CGAAG | 1 |
| CGAG*UGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*GAA | 2 |
| AA*GAAC | 1 |
- Annotations
-
- UAA/GAN variation (2)
- (1)
- Basepair signature
- cWW-tSH-R-tHS-cWW
- Heat map statistics
- Min 0.20 | Avg 0.44 | Max 0.89
Coloring options: