Motif IL_44161.1 Version IL_44161.1 of this group appears in releases 3.8 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8		9	1-9	2-7	2-8	3-6	4-5
1	IL_4IOA_008	4IOA	0.8789	1		X	LSU rRNA	C	303	A	304	A	305	G	306	*	C	354	G	355	A	356	A	357	G	359	cWW	tHW		ntHS	cWW
2	IL_4LFB_062	4LFB	0.0000	0	UAA/GAN variation	A	SSU rRNA	C	1466	G	1467	A	1468	G	1469	*	C	1431	G	1432	A	1433	A	1434	G	1435	cWW		tSH	tHS	cWW
3	IL_5J7L_303	5J7L	0.2049	0	UAA/GAN variation	DA	LSU rRNA	C	1526	G	1527	A	1528	G	1529	*	U	1542	G	1543	A	1544	A	1545	G	1546	cWW		tSH	ntHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAG*CGAACG	1
CGAG*CGAAG	1
CGAG*UGAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GA*GAA	2
AA*GAAC	1

Release history

Release	3.8	3.9	3.10	3.11
Date	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	New id, 2 parents	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: UAA/GAN variation (2)
(1)
Basepair signature: cWW-tSH-R-tHS-cWW
Heat map statistics: Min 0.20 | Avg 0.44 | Max 0.89

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