#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-21-52-53-4
1 IL_1FJG_0511FJG0.61640Not an internal loop (H)A SSU rRNAG1274A1275G1276*C1259C1260ntHScWW
2 IL_4NVV_0734NVV0.50791A23S Ribosomal RNAG1877A1879G1880*C1915C1916cWWncWScWW
3 IL_3U5F_0713U5F0.42830618S rRNAC1306U1307G1308*C1317G1318cSHcWWtHScWW
4 IL_4BPP_0694BPP0.30440A18S RRNAC1278U1279G1280*C1289G1290cSHcWWtHScWW
5 IL_4A1B_0204A1B0.37240126S RRNAC470A471C472*G506G507ncWWntHScWW
6 IL_4BPP_0054BPP0.53320A18S RRNAC49A50U51*A420G421cWWtHScWW
7 IL_2AW7_0042AW70.59920A16S ribosomal RNAC54A55U56*A356G357cWWtHScWW
8 IL_1FJG_0041FJG0.58620Minor groove platform (H)A SSU rRNAC54A55U56*A356G357cWWtHScWW
9 IL_3U5F_0053U5F0.54050618S rRNAC50A51U52*A428G429cWWtHScWW
10 IL_1FJG_0521FJG0.60770A SSU rRNAC1260A1261C1262*G1273G1274tHScWW
11 IL_2AW7_0502AW70.64032A16S ribosomal RNAU1199U1202C1203*G1057G1058cWWtHScWW
12 IL_1FJG_0421FJG0.67602Minor groove platform (H)A SSU rRNAU1199G1202C1203*G1057G1058cWWtHScWW
13 IL_3U5F_0623U5F0.58420618S rRNAC1459A1460C1461*G1178G1179cWWcWW
14 IL_2AW7_0672AW70.46450A16S ribosomal RNAU1440A1441G1442*C1460G1461cWWtHScWW
15 IL_2QWY_0032QWY0.40190ASAM-II riboswitchU40A41G42*C23A24cWWtHScWW
16 IL_4BPP_0594BPP0.32380A18S RRNAC1430A1431C1432*G1150G1151cWWntHScWW
17 IL_1FJG_0381FJG0.25220Minor groove platform (H)A SSU rRNAC1226A1227C1228*G953G954cWWntHScWW
18 IL_2AW7_0452AW70.31580A16S ribosomal RNAC1226A1227C1228*G953G954cWWntHScWW
19 IL_2QBG_0812QBG0.23271B23S rRNAU2438C2440U2441*A2070A2071cSHcWWcWW
20 IL_4IOA_0764IOA0.24151Minor groove platformX LSU rRNAU2417C2419C2420*G2053A2054cSHcWWcWW
21 IL_3U5H_0993U5H0.25561525S rRNAU2807C2809C2810*G2412A2413cSHcWWcWW
22 IL_4A1B_0964A1B0.24501126S RRNAU2795C2797C2798*G2407A2408cSHcWWcWW
23 IL_1S72_0751S720.22681Minor groove platform (H)0 LSU rRNAU2473C2475C2476*G2111A2112cSHcWWcWW
24 IL_4NVV_0814NVV0.21841A23S Ribosomal RNAU2450C2452C2453*G2092A2093cSHcWWcWW
25 IL_4IOA_0274IOA0.13810Minor groove platformX LSU rRNAU925C926C927*G875A876cSHcWWcWW
26 IL_1S72_0351S720.00000Minor groove platform (H)0 LSU rRNAU1009C1010C1011*G956A957cSHcWWcWW
27 IL_4NVV_0304NVV0.08970A23S Ribosomal RNAU959C960C961*G909A910cSHcWWcWW
28 IL_3U5H_0413U5H0.24230525S rRNAU1050U1051U1052*A997A998cWWtHScWW
29 IL_3U5F_0293U5F0.23570618S rRNAA518C519A520*U532U533cWWntHScWW
30 IL_1Y0Q_0031Y0Q0.22230Minor groove platformAGroup I catalytic intronA120C121G122*C192U193cWWntHScWW
31 IL_1U6B_0071U6B0.26990Minor groove platformB197-MERG128A129G130*C177C178cSHcWWtHScWW
32 IL_2AW7_0352AW70.42320A16S ribosomal RNAA746A747G748*C658U659cWWcWW
33 IL_1VW3_0651VW30.34671A21S ribosomal RNAU2704C2706G2707*C1970A1971cSHcWWcWW
34 IL_2QWY_0062QWY0.39220BSAM-II riboswitchU40A41G42*C23A24cWWcWW
35 IL_2GDI_0072GDI0.40820YTPP riboswitchC23C24U25*A35G36ncSHcWWcWW
36 IL_2GDI_0032GDI0.37010Minor groove platformXTPP riboswitchC23C24U25*A35G36ncSHcWWcWW
37 IL_3IWN_0013IWN0.48940Minor groove platformAC-di-GMP riboswitchG89A90U91*A2C3ncWWcWW
38 IL_1S72_0331S720.58490Single bulged A (H)0 LSU rRNAU942A943G944*C1023G1024ncSHcWWcWW
39 IL_3RW6_0013RW60.50921Minor groove platformHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAU53A55U56*A7A8ncSHcWWcWW
40 IL_4IOA_0034IOA0.34190Minor groove platformX LSU rRNAU447C448C449*G42A43cSHcWWcWW
41 IL_4NVV_0034NVV0.31100A23S Ribosomal RNAU461C462C463*G42A43cSHcWWcWW
42 IL_2QBG_0082QBG0.18370B23S rRNAU434C435C436*G43A44cSHcWWcWW
43 IL_4A1B_1284A1B0.37090126S RRNAU3338C3339U3340*A3281A3282cWWcWW
44 IL_1X8W_0041X8W0.50220ATetrahymena ribozyme RNAG129U130U131*A192C193ncSHcWWcWW
45 IL_4A1B_0494A1B0.47711126S RRNAG1039C1041U1042*A1062C1063cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAC*GG6
CAU*AG4
UACC*GA4
UCC*GA4
GAG*CC2
CUG*CG2
UAG*CG2
UAG*CA2
GA*UCC2
CCU*AG2
GAAG*CC1
UCAUC*GG1
UCAGC*GG1
UACU*AA1
GA*UACC1
UUU*AA1
ACA*UU1
ACG*CU1
AAG*CU1
UACG*CA1
GAU*AC1
UAAU*AA1
UCU*AA1
GUU*AC1
GACU*AC1
Non-Watson-Crick part of the motif
SequenceCounts
A*18
C*9
AC*7
U*4
AA*2
*C2
CAU*1
CAG*1
*AC1

Release history

Release1.14
Date2014-04-27
StatusUpdated, 1 parent

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_44540.5Only in the child motif
IL_44540.6
Compare
IL_2QBG_081, IL_4BPP_069, IL_2AW7_050, IL_1FJG_004, IL_4IOA_076, IL_2QBG_008, IL_2AW7_004, IL_2QWY_006, IL_1FJG_042, IL_2GDI_007, IL_2QWY_003, IL_2AW7_035, IL_2GDI_003, IL_1VW3_065, IL_3U5F_029, IL_3U5F_062, IL_1Y0Q_003, IL_4NVV_003, IL_4BPP_005, IL_4BPP_059, IL_3IWN_001, IL_1FJG_038, IL_4NVV_081, IL_2AW7_045, IL_1X8W_004, IL_3U5H_041, IL_4A1B_020, IL_2AW7_067, IL_4A1B_049, IL_4A1B_128, IL_1FJG_052, IL_1FJG_051, IL_1S72_075, IL_4IOA_027, IL_3RW6_001, IL_4IOA_003, IL_1S72_033, IL_1U6B_007, IL_3U5F_071, IL_1S72_035, IL_4NVV_073, IL_3U5F_005, IL_4NVV_030, IL_4A1B_096, IL_3U5H_099IL_4CUX_068, IL_4CUV_102, IL_4CUV_044, IL_4CUX_028, IL_4CUX_029, IL_4CUX_058
Annotations
  • (30)
  • Minor groove platform (8)
  • Minor groove platform (H) (5)
  • Not an internal loop (H) (1)
  • Single bulged A (H) (1)
  • Basepair signature
    cWW-cSH-tHS-cWW
    Heat map statistics
    Min 0.06 | Avg 0.50 | Max 1.00
    Help

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