Motif IL_44735.1 Version IL_44735.1 of this group appears in releases 3.8 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-4 | 3-5 | 3-6 | 4-5 | 4-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4YAZ_005 | 4YAZ | 0.5690 | 1 | R | Cyclic di-GMP-I riboswitch | A | 4 | A | 6 | C | 7 | * | G | 77 | A | 78 | A | 79 | A | 80 | U | 81 | cWW | cWW | ntSH | cSW | cSH | ||
| 2 | IL_4R0D_001 | 4R0D | 0.0000 | 1 | A | Group II catalytic intron | G | 339 | A | 340 | C | 342 | * | G | 10 | A | 11 | A | 12 | G | 13 | U | 14 | cWW | cWW | cWW | ntSW | |||
| 3 | IL_5J7L_013 | 5J7L | 0.7830 | 0 | AA | SSU rRNA | G | 212 | G | 213 | C | 214 | * | G | 203 | G | 204 | A | 205 | C | 206 | C | 207 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACAC*GAAAU | 1 |
| GAAC*GAAGU | 1 |
| GGC*GGACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CA*AAA | 1 |
| AA*AAG | 1 |
| G*GAC | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-R-cSH-cWW
- Heat map statistics
- Min 0.57 | Avg 0.48 | Max 0.79
Coloring options: