Motif IL_46387.2 Version IL_46387.2 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-8 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7D81_002 | 7D81 | 0.6723 | 0 | A | nadA RNA | G | 33 | G | 34 | U | 35 | G | 36 | G | 37 | * | C | 22 | G | 23 | C | 24 | cWW | ncwW | cWW | |||
| 2 | IL_4WF9_012 | 4WF9 | 0.4508 | 0 | Major groove minor groove platform with extra cWW | X | LSU rRNA | G | 409 | G | 410 | A | 411 | U | 412 | C | 413 | * | G | 304 | A | 305 | C | 306 | cWW | ncWB | ncWS | ncWW | |
| 3 | IL_2OEU_001 | 2OEU | 0.0000 | 0 | B+A | RNA (20-mer) | C | 14 | C | 15 | A | 16 | A | 17 | U | 18 | * | A | 3 | U | 4 | G | 5 | cWW | cWW | cWW | |||
| 4 | IL_9DID_003 | 9DID | 0.4003 | 0 | B | frameshifting pseudoknot RNA | G | 9 | U | 10 | U | 11 | C | 12 | U | 13 | * | A | 76 | C | 77 | C | 78 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUGG*CGC | 1 |
| GGAUC*GAC | 1 |
| CCAAU*AUG | 1 |
| GUUCU*ACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUG*G | 1 |
| GAU*A | 1 |
| CAA*U | 1 |
| UUC*C | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Major groove minor groove platform with extra cWW (1)
- Basepair signature
- cWW-cWW-L-cWW-L
- Heat map statistics
- Min 0.40 | Avg 0.48 | Max 0.85
Coloring options: