Motif IL_46796.1 Version IL_46796.1 of this group appears in releases 3.80 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-7 | 3-5 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8C3A_421 | 8C3A | 0.3524 | 0 | CM | SSU rRNA | U | 531 | A | 532 | A | 533 | C | 534 | * | G | 514 | U | 515 | A | 516 | cWW | tHS | ncWW | cWW | ||
| 2 | IL_4V88_411 | 4V88 | 0.3046 | 0 | Minor groove platform with extra cWW | A6 | SSU rRNA | U | 533 | A | 534 | A | 535 | C | 536 | * | G | 516 | U | 517 | A | 518 | cWW | tHS | ncWW | cWW | |
| 3 | IL_7RQB_031 | 7RQB | 0.0000 | 0 | Minor groove platform with extra cWW | 1A | LSU rRNA | A | 899 | A | 900 | A | 901 | C | 902 | * | G | 875 | C | 876 | U | 877 | cWW | tHS | ncWW | cWW | |
| 4 | IL_4P3T_002 | 4P3T | 0.3102 | 0 | B+A | RNA (23-mer) | G | 39 | A | 40 | A | 41 | G | 42 | * | C | 7 | C | 8 | C | 9 | cWW | ncWW | cWW | |||
| 5 | IL_4V9F_053 | 4V9F | 0.3199 | 0 | 0 | LSU rRNA | G | 1475 | A | 1476 | C | 1477 | U | 1478 | * | A | 1465 | C | 1466 | C | 1467 | cWW | cBW | cWW | |||
| 6 | IL_4N0T_004 | 4N0T | 0.4596 | 0 | B | U6 snRNA | G | 78 | A | 79 | U | 80 | G | 81 | * | C | 66 | C | 67 | C | 68 | cWW | ncWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAC*GUA | 2 |
| AAAC*GCU | 1 |
| GAAG*CCC | 1 |
| GACU*ACC | 1 |
| GAUG*CCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*U | 2 |
| AA*C | 2 |
| AC*C | 1 |
| AU*C | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Minor groove platform with extra cWW (2)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.17 | Avg 0.30 | Max 0.52
Coloring options: