RNA 3D Hub //

Motif IL_46796.2 Version IL_46796.2 of this group appears in releases 3.87 to 3.87

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 71-72-73-53-64-5
1 IL_4N0T_0044N0T0.49900BU6 snRNAG78A79U80G81*C66C67C68cWWncWWcWWcWW
2 IL_4V9F_0534V9F0.437300 LSU rRNAG1475A1476C1477U1478*A1465C1466C1467cWWcBWcWW
3 IL_4P3T_0024P3T0.37340B+ARNA (23-mer)G39A40A41G42*C7C8C9cWWncWWcWW
4 IL_8VTW_0308VTW0.30040Minor groove platform with extra cWW (H)1A LSU rRNAA899A900A901C902*G875C876U877cWWtHSncWWcWW
5 IL_4V88_4114V880.00000Minor groove platform with extra cWWA6 SSU rRNAU533A534A535C536*G516U517A518cWWtHSncWWcWW
6 IL_8C3A_4218C3A0.17310CM SSU rRNAU531A532A533C534*G514U515A516cWWtHSncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UAAC*GUA2
GAUG*CCC1
GACU*ACC1
GAAG*CCC1
AAAC*GCU1
Non-Watson-Crick part of the motif
SequenceCounts
AA*C2
AA*U2
AU*C1
AC*C1

Release history

Release3.87
Date2024-08-14
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (4)
  • Minor groove platform with extra cWW (1)
  • Minor groove platform with extra cWW (H) (1)
    • Basepair signature
    cWW-tHS-cWW-cWW
    Heat map statistics
    Min 0.17 | Avg 0.30 | Max 0.52
    Help

    Coloring options:

    IL_4N0T_004:IL_4N0T_004 = 0IL_4N0T_004:IL_4V9F_053 = 0.2628IL_4N0T_004:IL_4P3T_002 = 0.3066IL_4N0T_004:IL_8VTW_030 = 0.449IL_4N0T_004:IL_4V88_411 = 0.499IL_4N0T_004:IL_8C3A_421 = 0.5201IL_4V9F_053:IL_4N0T_004 = 0.2628IL_4V9F_053:IL_4V9F_053 = 0IL_4V9F_053:IL_4P3T_002 = 0.1688IL_4V9F_053:IL_8VTW_030 = 0.3183IL_4V9F_053:IL_4V88_411 = 0.4373IL_4V9F_053:IL_8C3A_421 = 0.4651IL_4P3T_002:IL_4N0T_004 = 0.3066IL_4P3T_002:IL_4V9F_053 = 0.1688IL_4P3T_002:IL_4P3T_002 = 0IL_4P3T_002:IL_8VTW_030 = 0.3015IL_4P3T_002:IL_4V88_411 = 0.3734IL_4P3T_002:IL_8C3A_421 = 0.3989IL_8VTW_030:IL_4N0T_004 = 0.449IL_8VTW_030:IL_4V9F_053 = 0.3183IL_8VTW_030:IL_4P3T_002 = 0.3015IL_8VTW_030:IL_8VTW_030 = 0IL_8VTW_030:IL_4V88_411 = 0.3004IL_8VTW_030:IL_8C3A_421 = 0.3504IL_4V88_411:IL_4N0T_004 = 0.499IL_4V88_411:IL_4V9F_053 = 0.4373IL_4V88_411:IL_4P3T_002 = 0.3734IL_4V88_411:IL_8VTW_030 = 0.3004IL_4V88_411:IL_4V88_411 = 0IL_4V88_411:IL_8C3A_421 = 0.1731IL_8C3A_421:IL_4N0T_004 = 0.5201IL_8C3A_421:IL_4V9F_053 = 0.4651IL_8C3A_421:IL_4P3T_002 = 0.3989IL_8C3A_421:IL_8VTW_030 = 0.3504IL_8C3A_421:IL_4V88_411 = 0.1731IL_8C3A_421:IL_8C3A_421 = 0IL_4N0T_004IL_4V9F_053IL_4P3T_002IL_8VTW_030IL_4V88_411IL_8C3A_421Discrepancy0.000.100.200.300.400.50
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