RNA 3D Hub //

Motif IL_47154.1 Version IL_47154.1 of this group appears in releases 3.2 to 3.11

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-74-5
1 IL_4Y4O_2844Y4O0.694012A LSU rRNAC2870C2871G2872C2874*G2843G2844G2845G2846cWWncSWcWW
2 IL_1NUV_0011NUV0.73642A+BRNA (13-mer) + RNA (11-mer)C22C23G26C27*G43G44A45G46cWWncWWcWW
3 IL_1NUV_0031NUV0.67832E+FRNA (13-mer) + RNA (11-mer)C22C23G26C27*G43G44A45G46cWWncWWcWW
4 IL_2O3Y_0032O3Y0.11791A+BRNA (23-mer)A15A17A18G19*C30G31C32U33cWWcSWcWW
5 IL_2OE8_0022OE80.00001B+ARNA (17-mer)A1490A1492A1493G1494*C1407G1408C1409U1410cWWcSWcWW
6 IL_2OE5_0022OE50.03241B+ARNA (17-mer)A1490A1492A1493G1494*C1407G1408C1409U1410cWWcSWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AAAAG*CGCU3
CCGAGC*GGAG2
CCGAC*GGGG1
Non-Watson-Crick part of the motif
SequenceCounts
AAA*GC3
CGAG*GA2
CGA*GG1

Release history

Release3.33.43.53.63.73.83.93.103.23.11
Date2018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-09-262018-10-19
StatusExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchNew id, no parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (6)
    • Basepair signature
    cWW-cSW-L-R-cWW
    Heat map statistics
    Min 0.03 | Avg 0.46 | Max 0.75
    Help

    Coloring options:

    IL_4Y4O_284:IL_4Y4O_284 = 0IL_4Y4O_284:IL_1NUV_001 = 0.6384IL_4Y4O_284:IL_1NUV_003 = 0.6211IL_4Y4O_284:IL_2O3Y_003 = 0.7024IL_4Y4O_284:IL_2OE8_002 = 0.694IL_4Y4O_284:IL_2OE5_002 = 0.7123IL_1NUV_001:IL_4Y4O_284 = 0.6384IL_1NUV_001:IL_1NUV_001 = 0IL_1NUV_001:IL_1NUV_003 = 0.422IL_1NUV_001:IL_2O3Y_003 = 0.751IL_1NUV_001:IL_2OE8_002 = 0.7364IL_1NUV_001:IL_2OE5_002 = 0.738IL_1NUV_003:IL_4Y4O_284 = 0.6211IL_1NUV_003:IL_1NUV_001 = 0.422IL_1NUV_003:IL_1NUV_003 = 0IL_1NUV_003:IL_2O3Y_003 = 0.6768IL_1NUV_003:IL_2OE8_002 = 0.6783IL_1NUV_003:IL_2OE5_002 = 0.6831IL_2O3Y_003:IL_4Y4O_284 = 0.7024IL_2O3Y_003:IL_1NUV_001 = 0.751IL_2O3Y_003:IL_1NUV_003 = 0.6768IL_2O3Y_003:IL_2O3Y_003 = 0IL_2O3Y_003:IL_2OE8_002 = 0.1179IL_2O3Y_003:IL_2OE5_002 = 0.1231IL_2OE8_002:IL_4Y4O_284 = 0.694IL_2OE8_002:IL_1NUV_001 = 0.7364IL_2OE8_002:IL_1NUV_003 = 0.6783IL_2OE8_002:IL_2O3Y_003 = 0.1179IL_2OE8_002:IL_2OE8_002 = 0IL_2OE8_002:IL_2OE5_002 = 0.0324IL_2OE5_002:IL_4Y4O_284 = 0.7123IL_2OE5_002:IL_1NUV_001 = 0.738IL_2OE5_002:IL_1NUV_003 = 0.6831IL_2OE5_002:IL_2O3Y_003 = 0.1231IL_2OE5_002:IL_2OE8_002 = 0.0324IL_2OE5_002:IL_2OE5_002 = 0IL_4Y4O_284IL_1NUV_001IL_1NUV_003IL_2O3Y_003IL_2OE8_002IL_2OE5_002Discrepancy0.000.200.400.60
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