Motif IL_47154.2 Version IL_47154.2 of this group appears in releases 3.12 to 3.14

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8	1-8	2-7	4-5
1	IL_2O3Y_003	2O3Y	0.1179	1	A+B	RNA (23-mer)	A	15	A	17	A	18	G	19	*	C	30	G	31	C	32	U	33	cWW	cSW	cWW
2	IL_2OE5_002	2OE5	0.0324	1	B+A	RNA (17-mer)	A	1490	A	1492	A	1493	G	1494	*	C	1407	G	1408	C	1409	U	1410	cWW	cSW	cWW
3	IL_2OE8_002	2OE8	0.0000	1	B+A	RNA (17-mer)	A	1490	A	1492	A	1493	G	1494	*	C	1407	G	1408	C	1409	U	1410	cWW	cSW	cWW
4	IL_4Y4O_284	4Y4O	0.6940	1	2A	LSU rRNA	C	2870	C	2871	G	2872	C	2874	*	G	2843	G	2844	G	2845	G	2846	cWW	ncSW	cWW
5	IL_1NUV_001	1NUV	0.7364	2	A+B	RNA (13-mer) + RNA (11-mer)	C	22	C	23	G	26	C	27	*	G	43	G	44	A	45	G	46	cWW	ncWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AAAAG*CGCU	3
CCGAC*GGGG	1
CCGAGC*GGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAA*GC	3
CGA*GG	1
CGAG*GA	1

Release history

Release	3.12	3.13	3.14
Date	2018-11-16	2018-12-14	2019-01-11
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-cSW-tHS-cWW
Heat map statistics: Min 0.03 | Avg 0.42 | Max 0.75

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