Motif IL_47154.3 Version IL_47154.3 of this group appears in releases 3.15 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4Y4O_284 | 4Y4O | 0.6940 | 1 | 2A | LSU rRNA | C | 2870 | C | 2871 | G | 2872 | C | 2874 | * | G | 2843 | G | 2844 | G | 2845 | G | 2846 | cWW | ncSW | cWW |
| 2 | IL_1NUV_001 | 1NUV | 0.7364 | 2 | A+B | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW |
| 3 | IL_1NUV_003 | 1NUV | 0.6783 | 2 | E+F | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW |
| 4 | IL_2O3Y_003 | 2O3Y | 0.1179 | 1 | A+B | RNA (23-mer) | A | 15 | A | 17 | A | 18 | G | 19 | * | C | 30 | G | 31 | C | 32 | U | 33 | cWW | cSW | cWW |
| 5 | IL_2OE8_002 | 2OE8 | 0.0000 | 1 | B+A | RNA (17-mer) | A | 1490 | A | 1492 | A | 1493 | G | 1494 | * | C | 1407 | G | 1408 | C | 1409 | U | 1410 | cWW | cSW | cWW |
| 6 | IL_2OE5_002 | 2OE5 | 0.0324 | 1 | B+A | RNA (17-mer) | A | 1490 | A | 1492 | A | 1493 | G | 1494 | * | C | 1407 | G | 1408 | C | 1409 | U | 1410 | cWW | cSW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAAG*CGCU | 3 |
| CCGAGC*GGAG | 2 |
| CCGAC*GGGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*GC | 3 |
| CGAG*GA | 2 |
| CGA*GG | 1 |
Release history
| Release | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-cSW-L-R-cWW
- Heat map statistics
- Min 0.03 | Avg 0.46 | Max 0.75
Coloring options: