Motif IL_47154.4 Version IL_47154.4 of this group appears in releases 3.54 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7RQB_109 | 7RQB | 0.6969 | 1 | 1A | LSU rRNA | C | 2870 | C | 2871 | G | 2872 | C | 2874 | * | G | 2843 | G | 2844 | G | 2845 | G | 2846 | cWW | ncSW | cWW |
| 2 | IL_1NUV_001 | 1NUV | 0.7364 | 2 | A+B | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW |
| 3 | IL_1NUV_003 | 1NUV | 0.6783 | 2 | E+F | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW |
| 4 | IL_2O3Y_003 | 2O3Y | 0.1179 | 1 | A+B | RNA (23-mer) | A | 15 | A | 17 | A | 18 | G | 19 | * | C | 30 | G | 31 | C | 32 | U | 33 | cWW | cSW | cWW |
| 5 | IL_2OE8_002 | 2OE8 | 0.0000 | 1 | B+A | RNA (17-mer) | A | 1490 | A | 1492 | A | 1493 | G | 1494 | * | C | 1407 | G | 1408 | C | 1409 | U | 1410 | cWW | cSW | cWW |
| 6 | IL_2OE5_002 | 2OE5 | 0.0324 | 1 | B+A | RNA (17-mer) | A | 1490 | A | 1492 | A | 1493 | G | 1494 | * | C | 1407 | G | 1408 | C | 1409 | U | 1410 | cWW | cSW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAAG*CGCU | 3 |
| CCGAGC*GGAG | 2 |
| CCGAC*GGGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*GC | 3 |
| CGAG*GA | 2 |
| CGA*GG | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-cSW-L-R-cWW
- Heat map statistics
- Min 0.03 | Avg 0.46 | Max 0.75
Coloring options: