Motif IL_47767.1 Version IL_47767.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-4 | 2-6 | 2-7 | 3-5 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4QIK_001 | 4QIK | 0.4589 | 0 | D+C | RNA (23-mer) | U | 11 | G | 12 | U | 13 | G | 14 | * | C | 10 | U | 11 | G | 12 | cWW | cWw | cWW | ||||
| 2 | IL_4N0T_004 | 4N0T | 0.3625 | 0 | B | U6 snRNA | G | 78 | A | 79 | U | 80 | G | 81 | * | C | 66 | C | 67 | C | 68 | cWW | ncWW | cWW | cWW | |||
| 3 | IL_8C3A_419 | 8C3A | 0.3675 | 0 | CM | SSU rRNA | G | 495 | G | 496 | U | 497 | C | 498 | * | G | 485 | G | 486 | C | 487 | cWW | ncWw | ncWW | ncSW | cWW | ||
| 4 | IL_7KJT_002 | 7KJT | 0.0000 | 0 | A | tRNA | C | 39 | C | 40 | A | 41 | G | 42 | * | C | 28 | U | 29 | G | 30 | ncWW | cWW | |||||
| 5 | IL_6ZDU_001 | 6ZDU | 0.3607 | 0 | C | Chains: C,D | A | 1283 | U | 1284 | A | 1285 | G | 1286 | * | C | 1268 | U | 1269 | U | 1270 | ncWW | cWW | |||||
| 6 | IL_6CK5_011 | 6CK5 | 0.7986 | 2 | A | Guanidine-I riboswitch | U | 36 | G | 37 | U | 39 | G | 41 | * | C | 21 | A | 22 | G | 23 | cWW | cWH | cWW | cWW | |||
| 7 | IL_4RUM_002 | 4RUM | 0.8920 | 1 | A | NiCo riboswitch RNA | U | 38 | G | 39 | A | 41 | G | 42 | * | C | 20 | A | 21 | A | 22 | cWW | cWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUG*CUG | 1 |
| GAUG*CCC | 1 |
| GGUC*GGC | 1 |
| CCAG*CUG | 1 |
| AUAG*CUU | 1 |
| UGUUCG*CAG | 1 |
| UGCAG*CAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GU*U | 1 |
| AU*C | 1 |
| GU*G | 1 |
| CA*U | 1 |
| UA*U | 1 |
| GUUC*A | 1 |
| GCA*A | 1 |
- Annotations
-
- (7)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.35 | Avg 0.54 | Max 0.99
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