Motif IL_49053.1 Version IL_49053.1 of this group appears in releases 3.7 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-2	1-5	3-4
1	IL_4V8P_207	4V8P	0.8643	1		D1	LSU rRNA	G	1039	A	1040	U	1042	*	A	1062	C	1063		cWW	cWW
2	IL_4WZJ_019	4WZJ	0.5932	0		XXX	U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.	U	25	U	26	G	27	*	C	3	G	4		cWW	cWW
3	IL_4WF9_098	4WF9	0.4846	0	Single bulged A	X	LSU rRNA	C	2628	A	2629	G	2630	*	C	2618	G	2619		cWW	cWW
4	IL_4Y1J_002	4Y1J	0.0000	6		A	yybP-ykoY riboswitch	G	38	U	39	G	46	*	C	59	C	60	cSH	cWW	cWW
5	IL_6CB3_004	6CB3	0.2504	6	Minor groove platform	B	RNA (99-MER)	G	38	U	39	G	46	*	C	59	C	60	cSH	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GACU*AC	1
UUG*CG	1
CAG*CG	1
GUCUAUUCG*CC	1
GUCAAUUCG*CC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AC*	1
U*	1
A*	1
UCUAUUC*	1
UCAAUUC*	1

Release history

Release	3.7	3.8	3.9	3.10	3.11
Date	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	New id, 2 parents	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Single bulged A (1)
Minor groove platform (1)
Basepair signature: cWW-cSH-cWW
Heat map statistics: Min 0.25 | Avg 0.53 | Max 0.94

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