Motif IL_50334.1 Version IL_50334.1 of this group appears in releases 3.54 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-6 | 2-3 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_045 | 4V9F | 0.0000 | 0 | Bulged stacked bases | 0 | LSU rRNA | G | 1269 | U | 1270 | * | A | 1286 | A | 1287 | U | 1288 | C | 1289 | cWW | cWW |
| 2 | IL_4V9F_070 | 4V9F | 0.9699 | 0 | Bulged stacked bases | 0 | LSU rRNA | G | 1974 | C | 1975 | * | G | 2005 | C | 2006 | A | 2007 | U | 2008 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GU*AAUC | 1 |
| GC*GCAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AU | 1 |
| *CA | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Bulged stacked bases (2)
- Basepair signature
- cWW-R-R-cWW
- Heat map statistics
- Min 0.97 | Avg 0.48 | Max 0.97
Coloring options: