Motif IL_51405.1 Version IL_51405.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-6 | 3-8 | 4-5 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3SIV_004 | 3SIV | 0.2338 | 1 | L+I | U4atac snRNA | U | 47 | G | 48 | A | 49 | G | 50 | * | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | cWW | tSH | tHS | cWW | ||
| 2 | IL_3SIV_005 | 3SIV | 0.2217 | 1 | I+L | U4atac snRNA | U | 47 | G | 48 | A | 49 | G | 50 | * | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | cWW | tSH | ntSs | tHS | cWW | |
| 3 | IL_3SIU_002 | 3SIU | 0.2231 | 1 | Kink-turn from U4 | F | U4atac snRNA | U | 47 | G | 48 | A | 49 | G | 50 | * | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | cWW | tSH | ntSs | tHS | cWW |
| 4 | IL_4TZZ_012 | 4TZZ | 0.1617 | 1 | I | T-box leader | C | 94 | G | 95 | A | 96 | G | 97 | * | C | 6 | G | 7 | A | 8 | G | 10 | A | 11 | G | 12 | cWW | ntSH | tSs | tHS | cWW | |
| 5 | IL_5GAN_008 | 5GAN | 0.0000 | 1 | V | U4 snRNA | C | 43 | G | 44 | A | 45 | G | 46 | * | C | 28 | A | 29 | G | 30 | G | 32 | A | 33 | G | 34 | cWW | tSH | ntSs | ntHS | cWW | |
| 6 | IL_5GAP_003 | 5GAP | 0.0598 | 1 | V | U4 snRNA | C | 43 | G | 44 | A | 45 | G | 46 | * | C | 28 | A | 29 | G | 30 | G | 32 | A | 33 | G | 34 | cWW | tSH | ntSs | ntHS | cWW | |
| 7 | IL_2OZB_002 | 2OZB | 0.1627 | 1 | Kink-turn from U4 | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | C | 42 | G | 43 | A | 44 | G | 45 | * | C | 28 | A | 29 | A | 30 | G | 32 | A | 33 | G | 34 | cWW | tSH | tSs | tHS | cWW |
| 8 | IL_1E7K_002 | 1E7K | 0.2038 | 1 | D | RNA (22-mer) | C | 42 | G | 43 | A | 44 | G | 45 | * | C | 28 | A | 29 | A | 30 | G | 32 | A | 33 | G | 34 | cWW | tSH | ntSs | tHS | cWW | |
| 9 | IL_3J7Y_026 | 3J7Y | 0.9277 | 3 | A | LSU rRNA | C | 2329 | U | 2330 | C | 2332 | G | 2333 | * | C | 2441 | U | 2442 | A | 2444 | U | 2445 | A | 2447 | G | 2448 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAG*CAAUGAG | 3 |
| CGAG*CAGUGAG | 2 |
| CGAG*CAAUGAG | 2 |
| CGAG*CGAUGAG | 1 |
| CUCCG*CUCAUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*AAUGA | 5 |
| GA*AGUGA | 2 |
| GA*GAUGA | 1 |
| UCC*UCAUAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Kink-turn from U4 (2)
- Basepair signature
- cWW-tSH-tHS-R-R-cWW
- Heat map statistics
- Min 0.06 | Avg 0.32 | Max 0.98
Coloring options: