Motif IL_52075.1 Version IL_52075.1 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2A64_008 | 2A64 | 0.6705 | 1 | A | RNase P class B | G | 237 | U | 238 | A | 239 | A | 241 | * | U | 191 | G | 192 | C | 193 | ncWW | ncSH | cWW | ||
| 2 | IL_3V7E_007 | 3V7E | 0.1714 | 0 | Major groove platform with extra pair (H) | D | SAM-I riboswitch | C | 244 | A | 245 | A | 246 | C | 247 | * | G | 288 | U | 289 | G | 290 | cWW | tSH | cSH | cWW |
| 3 | IL_5FJC_003 | 5FJC | 0.0000 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | cSH | cWW |
| 4 | IL_4OQU_001 | 4OQU | 0.0666 | 0 | Major groove platform with extra pair | A | SAM-I-IV-variant | C | 24 | A | 25 | A | 26 | C | 27 | * | G | 46 | U | 47 | G | 48 | cWW | tSH | cSH | cWW |
| 5 | IL_4AOB_003 | 4AOB | 0.1007 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | ncSH | cWW |
| 6 | IL_4KQY_003 | 4KQY | 0.1754 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 45 | A | 46 | A | 47 | C | 48 | * | G | 77 | U | 78 | G | 79 | cWW | ntSH | cSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAC*GUG | 5 |
| GUAAA*UGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*U | 5 |
| UAA*G | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform with extra pair (4)
- (1)
- Major groove platform with extra pair (H) (1)
- Basepair signature
- cWW-tSH-cSH-cWW
- Heat map statistics
- Min 0.07 | Avg 0.28 | Max 0.74
Coloring options: