Motif IL_52296.1 Version IL_52296.1 of this group appears in releases 3.33 to 3.45
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_205D_001 | 205D | 0.0000 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (12-mer) | U | 5 | U | 6 | U | 7 | G | 8 | * | U | 17 | U | 18 | U | 19 | G | 20 | cWW | cwW | cWw | cWW |
| 2 | IL_5J7L_353 | 5J7L | 0.7895 | 1 | Multiple bulged bases with non-canonical cWW | DA | LSU rRNA | G | 2843 | G | 2844 | U | 2845 | G | 2846 | * | C | 2870 | U | 2871 | A | 2872 | C | 2874 | cWW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUG*UUUG | 1 |
| GGUG*CUAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU*UU | 1 |
| GU*UAA | 1 |
Release history
| Release | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Tandem non-canonical cWW pairs (1)
- Multiple bulged bases with non-canonical cWW (1)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.79 | Avg 0.39 | Max 0.79
Coloring options: