Motif IL_53034.1 Version IL_53034.1 of this group appears in releases 3.48 to 3.57
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 2-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4ERD_003 | 4ERD | 0.9802 | 2 | C+D | RNA (22-mer) | G | 146 | G | 147 | A | 148 | * | U | 119 | C | 120 | C | 123 | cWW | ntSs | cWW | ||
| 2 | IL_4R4V_012 | 4R4V | 0.0000 | 2 | A | VS ribozyme RNA | G | 724||||7_556 | A | 725||||7_556 | C | 726||||7_556 | * | G | 749||||7_556 | G | 752||||7_556 | C | 753||||7_556 | cWW | cWW | cWW | ||
| 3 | IL_4R4V_006 | 4R4V | 0.0000 | 2 | Isolated non-canonical cWW pair | A | VS ribozyme RNA | G | 724 | A | 725 | C | 726 | * | G | 749 | G | 752 | C | 753 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAC*GCAGC | 2 |
| GGA*UCGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*CAG | 2 |
| G*CGA | 1 |
Release history
| Release | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Isolated non-canonical cWW pair (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.98 | Avg 0.44 | Max 0.98
Coloring options: