Motif IL_54070.1 Version IL_54070.1 of this group appears in releases 3.20 to 3.26
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-3 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1NTA_002 | 1NTA | 0.7648 | 4 | Major groove intercalation | A+B | RNA (22-mer) + RNA (18-mer) | C | 7 | A | 8 | G | 13 | * | C | 113 | G | 114 | cWW | cWW | |
| 2 | IL_4WF9_094 | 4WF9 | 0.0968 | 0 | Major groove platform | X | LSU rRNA | U | 2607 | G | 2608 | G | 2609 | * | C | 2534 | G | 2535 | cWW | chH | cWW |
| 3 | IL_4Y4O_271 | 4Y4O | 0.0000 | 0 | Major groove platform (H) | 2A | LSU rRNA | U | 2580 | G | 2581 | G | 2582 | * | C | 2507 | G | 2508 | cWW | chH | cWW |
| 4 | IL_4V9F_086 | 4V9F | 0.0971 | 0 | Major groove platform | 0 | LSU rRNA | U | 2615 | G | 2616 | G | 2617 | * | C | 2542 | G | 2543 | cWW | nchH | cWW |
| 5 | IL_4V9F_083 | 4V9F | 0.3631 | 0 | Major groove platform | 0 | LSU rRNA | U | 2492 | C | 2493 | G | 2494 | * | U | 2528 | G | 2529 | cWW | cHH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGG*CG | 3 |
| CAUUUGG*CG | 1 |
| UCG*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G* | 3 |
| AUUUG* | 1 |
| C* | 1 |
Release history
| Release | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 |
|---|---|---|---|---|---|---|---|
| Date | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform (3)
- Major groove intercalation (1)
- Major groove platform (H) (1)
- Basepair signature
- cWW-cHH-cWW
- Heat map statistics
- Min 0.10 | Avg 0.37 | Max 0.91
Coloring options: