#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-52-33-4
1 IL_1NTA_0021NTA0.76484Major groove intercalationA+BRNA (22-mer) + RNA (18-mer)C7A8G13*C113G114cWWcWW
2 IL_4WF9_0944WF90.09680Major groove platformX LSU rRNAU2607G2608G2609*C2534G2535cWWchHcWW
3 IL_4Y4O_2714Y4O0.00000Major groove platform (H)2A LSU rRNAU2580G2581G2582*C2507G2508cWWchHcWW
4 IL_4V9F_0864V9F0.09710Major groove platform0 LSU rRNAU2615G2616G2617*C2542G2543cWWnchHcWW
5 IL_4V9F_0834V9F0.36310Major groove platform0 LSU rRNAU2492C2493G2494*U2528G2529cWWcHHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGG*CG3
CAUUUGG*CG1
UCG*UG1
Non-Watson-Crick part of the motif
SequenceCounts
G*3
AUUUG*1
C*1

Release history

Release3.203.213.223.233.243.253.26
Date2019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-11
StatusNew id, 2 parentsExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform (3)
  • Major groove intercalation (1)
  • Major groove platform (H) (1)
  • Basepair signature
    cWW-cHH-cWW
    Heat map statistics
    Min 0.10 | Avg 0.37 | Max 0.91
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