Motif IL_54678.5 Version IL_54678.5 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_321 | 5J7L | 0.0000 | 3 | DA | LSU rRNA | A | 2054 | G | 2056 | * | C | 2612 | U | 2615 | cWW | cWW | |
| 2 | IL_4WF9_079 | 4WF9 | 0.1368 | 3 | X | LSU rRNA | A | 2081 | G | 2083 | * | C | 2639 | U | 2642 | cWW | cWW | |
| 3 | IL_4V9F_073 | 4V9F | 0.1590 | 3 | 0 | LSU rRNA | A | 2095 | G | 2097 | * | C | 2647 | U | 2650 | cWW | cWW | |
| 4 | IL_5TBW_092 | 5TBW | 0.4568 | 3 | Major groove platform with intercalation | 1 | LSU rRNA | G | 2396 | A | 2398 | * | U | 2981 | C | 2984 | cWW | cWW |
| 5 | IL_8C3A_097 | 8C3A | 0.4696 | 3 | Major groove platform with intercalation (H) | 1 | LSU rRNA | G | 2374 | A | 2376 | * | U | 2953 | C | 2956 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACG*CUAU | 2 |
| GAA*UACC | 2 |
| AAG*CUAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| C*UA | 2 |
| A*AC | 2 |
| A*UA | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Major groove platform with intercalation (1)
- Major groove platform with intercalation (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.26 | Max 0.50
Coloring options: