#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 6 71-72-53-4
1 IL_3J9W_1503J9W0.00000Isolated tHS basepair with bulges (H)BA LSU rRNAC2110A2111G2112*U2265G2266G2267G2268cWWtHScWW
2 IL_5A2Q_0305A2Q0.635242 SSU rRNAG563A564G565*C585G586G588C592ncWWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAG*UGGG1
GAG*CGAGGAUC1
Non-Watson-Crick part of the motif
SequenceCounts
A*GG1
A*GAGGAU1

Release history

Release2.0
Date2017-04-24
StatusNew id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated tHS basepair with bulges (H) (1)
  • (1)
  • Basepair signature
    cWW-R-tHS-cWW
    Heat map statistics
    Min 0.64 | Avg 0.32 | Max 0.64
    Help

    Coloring options:

    IL_3J9W_150:IL_3J9W_150 = 0IL_3J9W_150:IL_5A2Q_030 = 0.6352IL_5A2Q_030:IL_3J9W_150 = 0.6352IL_5A2Q_030:IL_5A2Q_030 = 0IL_3J9W_150IL_5A2Q_030Discrepancy0.000.100.200.300.400.500.60
    Copyright 2025 BGSU RNA group. Page generated in 0.1664 s
    Application loaded.