Motif IL_55516.1 Version IL_55516.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2A64_008 | 2A64 | 0.6105 | 1 | A | ribonuclease P RNA | G | 237 | U | 238 | A | 239 | A | 241 | * | U | 191 | G | 192 | C | 193 | ncWW | ncSH | cWW | |||
| 2 | IL_4V9F_072 | 4V9F | 0.2563 | 0 | 0 | LSU rRNA | G | 2090 | G | 2091 | G | 2092 | G | 2093 | * | U | 2652 | A | 2653 | C | 2654 | cWW | cWW | cSH | cWW | ||
| 3 | IL_6DME_003 | 6DME | 0.0000 | 0 | A | ppGpp Riboswitch | G | 33 | A | 34 | A | 35 | G | 36 | * | C | 20 | A | 21 | C | 22 | cWW | cwW | cSH | cWW | ||
| 4 | IL_7SZU_003 | 7SZU | 0.2969 | 0 | R | RNA aptamer | G | 49 | C | 50 | A | 51 | C | 52 | * | G | 25 | A | 26 | C | 27 | cWW | cWW | cSH | cWW | ||
| 5 | IL_8P9A_319 | 8P9A | 0.4162 | 0 | Major groove platform with extra pair (H) | AR | LSU rRNA | G | 2391 | C | 2392 | G | 2393 | G | 2394 | * | U | 2986 | A | 2987 | C | 2988 | cWW | cWW | cSH | cWW | |
| 6 | IL_3DD2_004 | 3DD2 | 0.5187 | 2 | B | RNA (26-MER) | G | 3 | A | 4 | A | 5 | A | 8 | * | UFT | 21 | A | 22 | CFL | 23 | cWW | cSW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAAA*UGC | 1 |
| GGGG*UAC | 1 |
| GAAG*CAC | 1 |
| GCAC*GAC | 1 |
| GCGG*UAC | 1 |
| GAA(CFL)AA*(UFT)A(CFL) | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*G | 1 |
| GG*A | 1 |
| AA*A | 1 |
| CA*A | 1 |
| CG*A | 1 |
| AA(CFL)A*A | 1 |
- Annotations
-
- (5)
- Major groove platform with extra pair (H) (1)
- Basepair signature
- cWW-cWW-cSH-cWW
- Heat map statistics
- Min 0.26 | Avg 0.45 | Max 0.95
Coloring options: