Motif IL_55553.1 Version IL_55553.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ET8_003 | 2ET8 | 0.4967 | 1 | Decoding loop related | B+A | RNA (22-mer) | C | 29 | A | 30 | C | 31 | * | G | 15 | A | 17 | G | 18 | cWW | cWW | |
| 2 | IL_8CRE_450 | 8CRE | 0.4706 | 0 | Other IL (H) | CM | SSU rRNA | U | 1234 | U | 1235 | U | 1236 | * | A | 1219 | C | 1220 | A | 1221 | cWW | cWW | |
| 3 | IL_9E7E_002 | 9E7E | 0.0000 | 0 | C | Rev Response Element SLII A31C/G39C | C | 14 | A | 15 | G | 16 | * | C | 28 | U | 29 | G | 30 | cWW | tWW | cWW | |
| 4 | IL_8P9A_464 | 8P9A | 0.5571 | 0 | Isolated tWW contact | sR | SSU rRNA | U | 1688 | A | 1689 | G | 1690 | * | C | 1711 | A | 1712 | G | 1713 | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAC*GAAG | 1 |
| UUU*ACA | 1 |
| CAG*CUG | 1 |
| UAG*CAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*AA | 1 |
| U*C | 1 |
| A*U | 1 |
| A*A | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Decoding loop related (1)
- Other IL (H) (1)
- Isolated tWW contact (1)
- (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.47 | Avg 0.41 | Max 0.62
Coloring options: