Motif IL_55884.1 Version IL_55884.1 of this group appears in releases 3.56 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7V9E_002 | 7V9E | 0.3238 | 1 | A | RNA (68-MER) | G | 12 | A | 13 | C | 14 | C | 15 | C | 16 | * | G | 33 | A | 34 | C | 35 | A | 36 | C | 38 | cWW | ncWWa | cWW | ||
| 2 | IL_3BNN_007 | 3BNN | 0.2009 | 1 | D+C | A site of human ribosome | C | 5 | A | 6 | C | 7 | C | 8 | C | 9 | * | G | 12 | A | 13 | C | 14 | A | 15 | G | 17 | cWW | ncWWa | cWW | ||
| 3 | IL_3BNN_006 | 3BNN | 0.0000 | 1 | C+D | A site of human ribosome | C | 5 | A | 6 | C | 7 | C | 8 | C | 9 | * | G | 12 | A | 13 | C | 14 | A | 15 | G | 17 | cWW | ncBW | cWWa | cWW | |
| 4 | IL_3IGI_010 | 3IGI | 0.6523 | 0 | A | Group IIC intron | G | 267 | A | 268 | G | 269 | G | 270 | U | 271 | * | A | 282 | A | 283 | G | 284 | U | 285 | C | 286 | cWW | tHW | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACCC*GACAAG | 2 |
| GACCC*GACAAC | 1 |
| GAGGU*AAGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACC*ACAA | 3 |
| AGG*AGU | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-tHS-cWW-cWW
- Heat map statistics
- Min 0.20 | Avg 0.36 | Max 0.73
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