Motif IL_56185.1 Version IL_56185.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | 5-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2A64_008 | 2A64 | 0.6268 | 2 | A | ribonuclease P RNA | U | 191 | G | 192 | C | 193 | * | G | 237 | A | 239 | A | 241 | cWW | ncWW | ncSH | ||
| 2 | IL_6WBR_001 | 6WBR | 0.2793 | 0 | B | RNA (94-MER) | U | 41 | A | 42 | C | 43 | * | G | 26 | G | 27 | A | 28 | cWW | cWW | |||
| 3 | IL_5T3K_001 | 5T3K | 0.1982 | 1 | B+A | RNA (16-mer) | C | 26 | A | 27 | C | 28 | * | G | 7 | A | 8 | G | 10 | cWW | cWw | cWW | ||
| 4 | IL_3E5C_001 | 3E5C | 0.1707 | 3 | Isolated non-canonical cWW with bulges | A | SMK box (SAM-III) Riboswitch | G | 12 | A | 13 | U | 14 | * | A | 27 | G | 28 | C | 32 | cWW | cWW | cWW | |
| 5 | IL_3TD0_005 | 3TD0 | 0.0909 | 1 | Isolated non-canonical cWW with bulges | B+A | RNA (23-mer) | C | 30 | G | 31 | C | 32 | * | G | 16 | A | 17 | G | 19 | cWW | cWW | cWW | |
| 6 | IL_3TD0_002 | 3TD0 | 0.0000 | 1 | Isolated non-canonical cWW with bulges | A+B | RNA (23-mer) | C | 7 | G | 8 | C | 9 | * | G | 39 | A | 40 | G | 42 | cWW | cWW | cWW | |
| 7 | IL_5M0H_001 | 5M0H | 0.2035 | 1 | Self complementary | A | ASH1 E3 (42 nt-TL/TLR) | A | 37 | U | 38 | U | 39 | * | A | 4 | A | 5 | U | 7 | cWW | cWW | ||
| 8 | IL_7LYF_004 | 7LYF | 0.1969 | 1 | A | tRNA | G | 70 | A | 71 | G | 72 | * | C | 51 | G | 52 | C | 54 | cWW | cWW | cWW | ||
| 9 | IL_1MFQ_003 | 1MFQ | 0.3722 | 0 | A | SRP RNA | U | 132 | A | 133 | U | 134 | * | A | 163 | G | 164 | G | 165 | cWW | ncWW | cWW | ||
| 10 | IL_3CUL_008 | 3CUL | 0.3788 | 0 | C | RNA (92-MER) | C | 87 | A | 88 | G | 89 | * | U | 57 | G | 58 | G | 59 | cWW | ncWW | ncWWa |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGC*GAAG | 2 |
| UGC*GUAAA | 1 |
| UAC*GGA | 1 |
| CAC*GAAG | 1 |
| GAU*AGAUGC | 1 |
| AUU*AACU | 1 |
| GAG*CGAC | 1 |
| UAU*AGG | 1 |
| CAG*UGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*G | 3 |
| G*AA | 2 |
| G*UAA | 1 |
| A*AA | 1 |
| A*GAUG | 1 |
| U*AC | 1 |
| A*GA | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW with bulges (3)
- Self complementary (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.09 | Avg 0.34 | Max 0.79
Coloring options: